wopmars 0.0.4

Workflow Python Manager for Reproducible Science

WopMars: Workflow Python Manager for Reproducible Science
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WopMars is a database-driven workflow manager written in python similar to GNU Makefile or Snakemake. The originality of WopMars is that it is closely connected to a relational database and can take database tables as inputs and outputs in the definition file. WopMars uses SQLAlchemy object relational mapper (ORM) and has been currently tested with SQLite, MariaDB/MySQL and PostgreSQL.


Installation
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To install wopmars, you have to get the sources on the git repository and then go to the source directory and type::

pip install .

To install wopmars with the --dot option to generate workflow schemes::

pip install .[pygraphviz]

Documentation
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The `WopMars documentation <http://wopmars.readthedocs.org/>`_ with user guide and
API reference is hosted at Read The Docs.