worms 0.1.26

=====
worms
=====


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:target: https://pypi.python.org/pypi/worms

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:target: https://travis-ci.org/willsheffler/worms

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:target: https://worms.readthedocs.io/en/latest/?badge=latest
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:target: https://pyup.io/repos/github/willsheffler/worms/
:alt: Updates



Protein Origami via Genetic Fusions


.. image:: https://lh5.googleusercontent.com/9OQLQnMD1IRah4lSRZtROkiLuabY6oclGnGhkGJhsT-gfiFBo_uAQyu-EOxRXziC75iiMpPkTBxmYxE214Si=w2177-h1945
:width: 300px


* Free software: Apache Software License 2.0
* Documentation: https://worms.readthedocs.io.


Features
--------

please send angry emails to willsheffler@gmail.com until there are docs here.

Credits
---------

This package was created with Cookiecutter_ and the `audreyr/cookiecutter-pypackage`_ project template.

.. _Cookiecutter: https://github.com/audreyr/cookiecutter
.. _`audreyr/cookiecutter-pypackage`: https://github.com/audreyr/cookiecutter-pypackage



=======
History
=======

0.1.24 (2018-04-25)
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* change two-stage xindex thershold multiplier for 1st stage from 1.25 to 2.0

0.1.23 (2018-04-24)
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* add initial draft of Una's criteria for P213 xtal

0.1.22 (2018-04-20)
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* add initial draft of Una's criteria for P3, P4 and P6 layers

0.1.21 (2018-04-19)
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* peace sign heterotrimer site compatibility bug fix
* xindex search now stores lists instead of one-per-bin

0.1.20 (2018-04-16)
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* add more dihedral sym files

0.1.19 (2018-04-6)
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* minor performance impovements in hash-index based search

0.1.17 (2018-04-4)
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* hash-index based search for Cyclic(..., origin_seg=...)

0.1.16 (2018-03-15)
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* I52 symmetry bug fix

0.1.15 (2018-03.05)
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* add NullCriteria that always returns 0 err


0.1.14 (2018-02-28)
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* fix provenance bug in 'cyclic entry' cases
* try to make serialization of Segments more efficient

0.1.13 (2018-02-16)
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* raise exception if system too large

0.1.12 (2018-02-16)
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* partial bignum fix

0.1.11 (2018-02-15)
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* fix memory bug
* make distribution work better
* maybe fix pose bug, still some logic err, but maybe ok

0.1.10 (2018-02-15)
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* add max_results option to grow
* fix C2 sym bug
* fix xform axis cen bug
* fix memory "bug" with batch parallel processing

0.1.9 (2018-02-08)
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* add max_samples option to grow

0.1.8 (2018-02-07)
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* origin_seg bug fix

0.1.6 (2018-02-01)
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* middle-to-end cyclic fusions working
* add pretty logo of mid-to-end C3 fusion

0.1.6 (2018-02-01)
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* bug fix in fullatom option

0.1.5 (2018-02-01)
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* add fullatom option to Worms.sympose
* cyclic premutation working for simple beginning-to-end case

0.1.4 (2018-02-01)
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* pypi deplolment derp

0.1.3 (2018-02-01)
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* pypi deplolment derp

0.1.2 (2018-01-23)
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* Add __main__ for module to run tests
* move worms.pdb to worms.data because pdb is kinda reserved
* move utility stuff to util.py
* add some interactive visualization utils for debugging

0.1.1 (2018-01-23)
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* First release on PyPI.