Skip to main content

Protion Origami via Genetic Fusions

Project description

=====
worms
=====


.. image:: https://img.shields.io/pypi/v/worms.svg
:target: https://pypi.python.org/pypi/worms

.. image:: https://img.shields.io/travis/willsheffler/worms.svg
:target: https://travis-ci.org/willsheffler/worms

.. image:: https://readthedocs.org/projects/worms/badge/?version=latest
:target: https://worms.readthedocs.io/en/latest/?badge=latest
:alt: Documentation Status

.. image:: https://pyup.io/repos/github/willsheffler/worms/shield.svg
:target: https://pyup.io/repos/github/willsheffler/worms/
:alt: Updates



Protein Origami via Genetic Fusions


.. image:: https://lh5.googleusercontent.com/9OQLQnMD1IRah4lSRZtROkiLuabY6oclGnGhkGJhsT-gfiFBo_uAQyu-EOxRXziC75iiMpPkTBxmYxE214Si=w2177-h1945
:width: 300px


* Free software: Apache Software License 2.0
* Documentation: https://worms.readthedocs.io.


Features
--------

please send angry emails to willsheffler@gmail.com until there are docs here.

Credits
---------

This package was created with Cookiecutter_ and the `audreyr/cookiecutter-pypackage`_ project template.

.. _Cookiecutter: https://github.com/audreyr/cookiecutter
.. _`audreyr/cookiecutter-pypackage`: https://github.com/audreyr/cookiecutter-pypackage



=======
History
=======

0.1.24 (2018-04-25)
------------------

* change two-stage xindex thershold multiplier for 1st stage from 1.25 to 2.0

0.1.23 (2018-04-24)
------------------

* add initial draft of Una's criteria for P213 xtal

0.1.22 (2018-04-20)
------------------

* add initial draft of Una's criteria for P3, P4 and P6 layers

0.1.21 (2018-04-19)
------------------

* peace sign heterotrimer site compatibility bug fix
* xindex search now stores lists instead of one-per-bin

0.1.20 (2018-04-16)
------------------

* add more dihedral sym files

0.1.19 (2018-04-6)
------------------

* minor performance impovements in hash-index based search

0.1.17 (2018-04-4)
------------------

* hash-index based search for Cyclic(..., origin_seg=...)

0.1.16 (2018-03-15)
------------------

* I52 symmetry bug fix

0.1.15 (2018-03.05)
------------------

* add NullCriteria that always returns 0 err


0.1.14 (2018-02-28)
------------------

* fix provenance bug in 'cyclic entry' cases
* try to make serialization of Segments more efficient

0.1.13 (2018-02-16)
------------------

* raise exception if system too large

0.1.12 (2018-02-16)
------------------

* partial bignum fix

0.1.11 (2018-02-15)
------------------

* fix memory bug
* make distribution work better
* maybe fix pose bug, still some logic err, but maybe ok

0.1.10 (2018-02-15)
------------------

* add max_results option to grow
* fix C2 sym bug
* fix xform axis cen bug
* fix memory "bug" with batch parallel processing

0.1.9 (2018-02-08)
------------------

* add max_samples option to grow

0.1.8 (2018-02-07)
------------------

* origin_seg bug fix

0.1.6 (2018-02-01)
------------------

* middle-to-end cyclic fusions working
* add pretty logo of mid-to-end C3 fusion

0.1.6 (2018-02-01)
------------------

* bug fix in fullatom option

0.1.5 (2018-02-01)
------------------

* add fullatom option to Worms.sympose
* cyclic premutation working for simple beginning-to-end case

0.1.4 (2018-02-01)
------------------

* pypi deplolment derp

0.1.3 (2018-02-01)
------------------

* pypi deplolment derp

0.1.2 (2018-01-23)
------------------

* Add __main__ for module to run tests
* move worms.pdb to worms.data because pdb is kinda reserved
* move utility stuff to util.py
* add some interactive visualization utils for debugging

0.1.1 (2018-01-23)
------------------

* First release on PyPI.


Project details


Download files

Download the file for your platform. If you're not sure which to choose, learn more about installing packages.

Source Distribution

worms-0.1.26.tar.gz (831.2 kB view hashes)

Uploaded source

Built Distribution

worms-0.1.26-py2.py3-none-any.whl (843.5 kB view hashes)

Uploaded py2 py3

Supported by

AWS AWS Cloud computing Datadog Datadog Monitoring Facebook / Instagram Facebook / Instagram PSF Sponsor Fastly Fastly CDN Google Google Object Storage and Download Analytics Huawei Huawei PSF Sponsor Microsoft Microsoft PSF Sponsor NVIDIA NVIDIA PSF Sponsor Pingdom Pingdom Monitoring Salesforce Salesforce PSF Sponsor Sentry Sentry Error logging StatusPage StatusPage Status page