xpore 0.5.5

xpore is a python package for Nanopore data analysis.

Python package for detection of differential RNA modifications from direct RNA sequencing.

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PyPI installation (recommended)

xPore requires Python3. To install the latest release, run

$ pip install xpore 
$ pyensembl install --release 91 --species homo_sapiens  # please specify the compatible Ensembl release with your data when you install it.

See our documentation here!

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Preprint

Please check out our preprint "Detection of differential RNA modifications from direct RNA sequencing of human cell lines" here.

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Contacts

xPore is maintained by Ploy N. Pratanwanich and Jonathan Goeke from the Genome Institute of Singapore, A*STAR.

If you want to contribute, please leave an issue in our repo.

Thank you!