xpore is a python package for Nanopore data analysis of differential RNA modifications.
xPore is a Python package for identification and quantification of differential RNA modifications from direct RNA sequencing.
xPore requires Python3. To install the latest release with PyPI (recommended), run
$ pip install xpore $ pyensembl install --release 91 --species homo_sapiens # please specify the compatible Ensembl release with your data when you install it.
Please refer to the xPore documention (https://xpore.readthedocs.io) for additional information, a quick start guide, and details on the data processing and output file format.
xPore is described in detail in a preprint (https://www.biorxiv.org/content/10.1101/2020.06.18.160010v1)
The current release is xPore v1.0.
Please refer to the github release history for previous releases: https://github.com/GoekeLab/xpore/releases
If you use xPore in your research, please cite
If you want to contribute, please leave an issue.
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