yamale 1.9.0

A schema and validator for YAML.

Yamale (ya·ma·lē)

A schema and validator for YAML.

What's YAML? See the current spec here and an introduction to the syntax here.

Requirements

• Python 2.7+
• Python 3.4+ (Only tested on 3.4, may work on older versions)
• PyYAML
• ruamel.yaml (optional)

Install

pip

$ pip install yamale

Manual

1. Download Yamale from: https://github.com/23andMe/Yamale/archive/master.zip
2. Unzip somewhere temporary
3. Run python setup.py install (may have to prepend sudo)

Usage

Command line

Yamale can be run from the command line to validate one or many YAML files. Yamale will search the directory you supply (current directory is default) for YAML files. Each YAML file it finds it will look in the same directory as that file for its schema, if there is no schema Yamale will keep looking up the directory tree until it finds one. If Yamale can not find a schema it will tell you.

Usage:

usage: yamale [-h] [-s SCHEMA] [-n CPU_NUM] [-p PARSER] [PATH]

Validate yaml files.

positional arguments:
  PATH                  folder to validate. Default is current directory.

optional arguments:
  -h, --help            show this help message and exit
  -s SCHEMA, --schema SCHEMA
                        filename of schema. Default is schema.yaml.
  -n CPU_NUM, --cpu-num CPU_NUM
                        number of CPUs to use. Default is 4.
  -p PARSER, --parser PARSER
                        YAML library to load files. Choices are "ruamel" or
                        "pyyaml" (default).

API

There are several ways to feed Yamale schema and data files. The simplest way is to let Yamale take care of reading and parsing your YAML files.

All you need to do is supply the files' path:

# Import Yamale and make a schema object:
import yamale
schema = yamale.make_schema('./schema.yaml')

# Create a Data object
data = yamale.make_data('./data.yaml')

# Validate data against the schema. Throws a ValueError if data is invalid.
yamale.validate(schema, data)

If data is valid, nothing will happen. However, if data is invalid Yamale will throw a ValueError with a message containing all the invalid nodes.

You can also specifiy an optional parser if you'd like to use the ruamel.yaml (YAML 1.2 support) instead:

# Import Yamale and make a schema object, make sure ruamel.yaml is installed already.
import yamale
schema = yamale.make_schema('./schema.yaml', parser='ruamel')

# Create a Data object
data = yamale.make_data('./data.yaml', parser='ruamel')

# Validate data against the schema same as before.
yamale.validate(schema, data)

Schema

To use Yamale you must make a schema. A schema is a valid YAML file with one or more documents inside. Each node terminates in a string which contains valid Yamale syntax. For example, str() represents a String validator.

A basic schema:

name: str()
age: int(max=200)
height: num()
awesome: bool()

And some YAML that validates:

name: Bill
age: 26
height: 6.2
awesome: True

Take a look at the Examples section for more complex schema ideas.

Includes

Schema files may contain more than one YAML document (nodes separated by ---). The first document found will be the base schema. Any additional documents will be treated as Includes. Includes allow you to define a valid structure once and use it several times. They also allow you to do recursion.

A schema with an Include validator:

person1: include('person')
person2: include('person')
---
person:
    name: str()
    age: int()

Some valid YAML:

person1:
    name: Bill
    age: 70

person2:
    name: Jill
    age: 20

Every root node not in the first YAML document will be treated like an include:

person: include('friend')
group: include('family')
---
friend:
    name: str()
family:
    name: str()

Is equivalent to:

person: include('friend')
group: include('family')
---
friend:
    name: str()
---
family:
    name: str()

Recursion

You can get recursion using the Include validator.

This schema:

person: include('human')
---
human:
    name: str()
    age: int()
    friend: include('human', required=False)

Will validate this data:

person:
    name: Bill
    age: 50
    friend:
        name: Jill
        age: 20
        friend:
            name: Will
            age: 10

Adding external includes

After you construct a schema you can add extra, external include definitions by calling schema.add_include(dict). This method takes a dictionary and adds each key as another include.

Validators

Here are all the validators Yamale knows about. Every validator takes a required keyword telling Yamale whether or not that node must exist. By default every node is required. Example: str(required=False)

You can also require that an optional value is not None by using the none keyword. By default Yamale will accept None as a valid value for a key that's not required. Reject None values with none=False in any validator. Example: str(required=False, none=False).

Some validators take keywords and some take arguments, some take both. For instance the enum() validator takes one or more constants as arguments and the required keyword: enum('a string', 1, False, required=False)

String - str(min=int, max=int, exclude=string)

Validates strings.

• keywords
  • min: len(string) >= min
  • max: len(string) <= max
  • exclude: Rejects strings that contains any character in the excluded value.

Examples:

• str(max=10, exclude='?!'): Allows only strings less than 11 characters that don't contain ? or !.

Regex - regex([patterns], name=string, ignore_case=False, multiline=False, dotall=False)

Validates strings against one or more regular expressions.

• arguments: one or more Python regular expression patterns
• keywords:
  • name: A friendly description for the patterns.
  • ignore_case: Validates strings in a case-insensitive manner.
  • multiline: ^ and $ in a pattern match at the beginning and end of each line in a string in addition to matching at the beginning and end of the entire string. (A pattern matches at the beginning of a string even in multiline mode; see below for a workaround.)
  • dotall: . in a pattern matches newline characters in a validated string in addition to matching every character that isn't a newline.

Examples:

• regex('^[^?!]{,10}$'): Allows only strings less than 11 characters that don't contain ? or !.
• regex(r'^(\d+)(\s\1)+$', name='repeated natural'): Allows only strings that contain two or more identical digit sequences, each separated by a whitespace character. Non-matching strings like sugar are rejected with a message like 'sugar' is not a repeated natural.
• regex('.*^apples$', multiline=True, dotall=True): Allows the string apples as well as multiline strings that contain the line apples.

Integer - int(min=int, max=int)

Validates integers.

• keywords
  • min: int >= min
  • max: int <= max

Number - num(min=float, max=float)

Validates integers and floats.

• keywords
  • min: num >= min
  • max: num <= max

Boolean - bool()

Validates booleans.

Null - null()

Validates null values.

Enum - enum([primitives])

Validates from a list of constants.

• arguments: constants to test equality with

Examples:

• enum('a string', 1, False): a value can be either 'a string', 1 or False

Day - day(min=date, max=date)

Validates a date in the form of YYYY-MM-DD.

• keywords
  • min: date >= min
  • max: date <= max

Examples:

• day(min='2001-01-01', max='2100-01-01'): Only allows dates between 2001-01-01 and 2100-01-01.

Timestamp - timestamp(min=time, max=time)

Validates a timestamp in the form of YYYY-MM-DD HH:MM:SS.

• keywords
  • min: time >= min
  • max: time <= max

Examples:

• timestamp(min='2001-01-01 01:00:00', max='2100-01-01 23:00:00'): Only allows times between 2001-01-01 01:00:00 and 2100-01-01 23:00:00.

List - list([validators])

Validates lists. If one or more validators are passed to list() only nodes that pass at least one of those validators will be accepted.

• arguments: one or more validators to test values with

• keywords

  • min: len(list) >= min
  • max: len(list) <= max

Examples:

• list(): Validates any list
• list(include('custom'), int(), min=4): Only validates lists that contain the custom include or integers and contains a minimum of 4 items.

Map - map([validators])

Validates maps. Use when you want a node to contain freeform data. Similar to List, Map also takes a number of validators to run against its children nodes. A child validates if at least one validator passes.

Examples:

• map(): Validates any map
• map(str(), int()): Only validates maps whose children are strings or integers.

Any - any([validators])

Validates against a union of types. Use when a node can contain one of several types. It is valid if at least one of the listed validators is valid.

• arguments: one or more validators to test values with

Examples:

• any(int(), null()): Validates an integer or a null value.
• any(num(), include('vector')): Validates a number or an included 'vector' type.

Include - include(include_name)

Validates included structures. Must supply the name of a valid include.

• arguments: single name of a defined include, surrounded by quotes.

Examples:

• include('person')

Custom validators

It is also possible to add your own custom validators. This is an advanced topic, but here is an example of adding a Date validator and using it in a schema as date()

import yamale
from yamale.validators import DefaultValidators, Validator

class Date(Validator):
    """ Custom Date validator """
    tag = 'date'

    def _is_valid(self, value):
        return isinstance(value, datetime.date)

validators = DefaultValidators.copy()  # This is a dictionary
validators[Date.tag] = Date
schema = yamale.make_schema('./schema.yaml' validators=validators)
# Then use `schema` as normal

Examples

Using keywords

Schema:

optional: str(required=False)
optional_min: int(min=1, required=False)
min: num(min=1.5)
max: int(max=100)

Valid Data:

optional_min: 10
min: 1.6
max: 100

Includes and recursion

Schema:

customerA: include('customer')
customerB: include('customer')
recursion: include('recurse')
---
customer:
    name: str()
    age: int()
    custom: include('custom_type')

custom_type:
    integer: int()

recurse:
    level: int()
    again: include('recurse', required=False)

Valid Data:

customerA:
    name: bob
    age: 900
    custom:
        integer: 1
customerB:
    name: jill
    age: 1
    custom:
        integer: 3
recursion:
    level: 1
    again:
        level: 2
        again:
            level: 3
            again:
                level: 4

Lists

Schema:

list_with_two_types: list(str(), include('variant'))
questions: list(include('question'))
---
variant:
  rsid: str()
  name: str()

question:
  choices: list(include('choices'))
  questions: list(include('question'), required=False)

choices:
  id: str()

Valid Data:

list_with_two_types:
  - 'some'
  - rsid: 'rs123'
    name: 'some SNP'
  - 'thing'
  - rsid: 'rs312'
    name: 'another SNP'
questions:
  - choices:
      - id: 'id_str'
      - id: 'id_str1'
    questions:
      - choices:
        - id: 'id_str'
        - id: 'id_str1'

Writing Tests

To validate YAML files when you run your program's tests use Yamale's YamaleTestCase

Example:

class TestYaml(YamaleTestCase):
    base_dir = os.path.dirname(os.path.realpath(__file__))
    schema = 'schema.yaml'
    yaml = 'data.yaml'
    # or yaml = ['data-*.yaml', 'some_data.yaml']

    def runTest(self):
        self.assertTrue(self.validate())

base_dir: String path to prepend to all other paths. This is optional.

schema: String of path to the schema file to use. One schema file per test case.

yaml: String or list of yaml files to validate. Accepts globs.

Developers

Testing

Yamale uses Tox to run its tests against multiple Python versions. To run tests, first checkout Yamale, install Tox, then run make test in the Yamale's root directory. You may also have to install the correct Python versions to test with as well.

Releasing

Yamale uses Travis to upload new tags to PyPi. To release a new version:

1. Make a commit with the new version in setup.py.
2. Run tests for good luck.
3. Run make release.

Travis will take care of the rest.