zarr-tools
Convert nd2 to zarr
Installation
pip install zarr-tools
Usage
As command line
python -m zarr-tools file.nd2
This will produce the zarr dataset with default 5 steps of binning for xy dimensions.
As python module
import nd2
import zarr_tools
data = nd2.ND2File("input.nd2").to_dask()
zarr_tools.convert.to_zarr(
data,
channel_axis=1,
path="output.zarr",
steps=4,
name=['BF','TRITC'],
colormap=['gray','green'],
lut=((1000,30000),(440, 600)),
)
1 maintainer
Metadata
1 maintainer
Release files for zarr-tools 0.6.0
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Source distribution (sdist)
| File | Size | Uploaded | Provenance | Actions |
|---|---|---|---|---|
| zarr_tools-0.6.0.tar.gz | 9.5 kB | Without provenance | Details for zarr_tools-0.6.0.tar.gz |
Built distribution (wheel)
| File | Interpreter | ABI | Platform | Actions Reset |
|---|---|---|---|---|
| zarr_tools-0.6.0-py3-none-any.whl | Python 3 | none | any | Details for zarr_tools-0.6.0-py3-none-any.whl |
Total release size: 16.4 kB
Release files / zarr_tools-0.6.0.tar.gz
| Download URL | zarr_tools-0.6.0.tar.gz |
|---|---|
| Size | 9.5 kB |
| Tags | Source |
|
SHA-256 checksum How to use checksums |
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Release files / zarr_tools-0.6.0-py3-none-any.whl
| Download URL | zarr_tools-0.6.0-py3-none-any.whl |
|---|---|
| Size | 6.9 kB |
| Tags | Python 3 |
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SHA-256 checksum How to use checksums |
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No |
| Uploaded via |
twine/6.2.0 CPython/3.14.2
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Security for zarr-tools 0.6.0
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