Convert nd2 to zarr
Project description
zarr-tools
Convert nd2 to zarr
Installation
pip install zarr-tools
Usage
As command line
python -m zarr-tools file.nd2
This will produce the zarr dataset with default 5 steps of binning for xy dimensions.
As python module
import nd2
import zarr_tools
data = nd2.ND2File("input.nd2").to_dask()
zarr_tools.convert.to_zarr(
data,
channel_axis=1,
path="output.zarr",
steps=4,
name=['BF','TRITC'],
colormap=['gray','green'],
lut=((1000,30000),(440, 600)),
)
Release history Release notifications | RSS feed
Download files
Download the file for your platform. If you're not sure which to choose, learn more about installing packages.
Source Distribution
zarr-tools-0.4.5.tar.gz
(7.1 kB
view details)
Built Distribution
Filter files by name, interpreter, ABI, and platform.
If you're not sure about the file name format, learn more about wheel file names.
Copy a direct link to the current filters
File details
Details for the file zarr-tools-0.4.5.tar.gz.
File metadata
- Download URL: zarr-tools-0.4.5.tar.gz
- Upload date:
- Size: 7.1 kB
- Tags: Source
- Uploaded using Trusted Publishing? No
- Uploaded via: twine/4.0.2 CPython/3.11.2
File hashes
| Algorithm | Hash digest | |
|---|---|---|
| SHA256 |
fb445815036f4992074492019f728949286995b6cb4a52906989aa70f23e1329
|
|
| MD5 |
89f1008e4f10fdf078fc5dc64efe6ea0
|
|
| BLAKE2b-256 |
6e00ae8a8de1cf6269222eb512180c82f4574cae8e2d60b2a8e4616c50ac302a
|
File details
Details for the file zarr_tools-0.4.5-py3-none-any.whl.
File metadata
- Download URL: zarr_tools-0.4.5-py3-none-any.whl
- Upload date:
- Size: 5.4 kB
- Tags: Python 3
- Uploaded using Trusted Publishing? No
- Uploaded via: twine/4.0.2 CPython/3.11.2
File hashes
| Algorithm | Hash digest | |
|---|---|---|
| SHA256 |
730f5bd012e82b9948849dcec426b767c4a5b5f156d478540827a010b5e9cbe8
|
|
| MD5 |
43bf00447016f09f3c9c531fd902b424
|
|
| BLAKE2b-256 |
047eeda632c94ab18d9718144de2b36a032577ed5195fb048408cddb21295c50
|
