zntrack 0.7.3

Create, Run and Benchmark DVC Pipelines in Python

ZnTrack: A Parameter Tracking Package for Python

ZnTrack zɪŋk træk is a lightweight and easy-to-use package for tracking parameters in your Python projects using DVC. With ZnTrack, you can define parameters in Python classes and monitor how they change over time. This information can then be used to compare the results of different runs, identify computational bottlenecks, and avoid the re-running of code components where parameters have not changed.

Key Features

• Parameter, output and metric tracking: ZnTrack makes it easy to store and track the values of parameters in your Python code. It further allows you to store any outputs produced and gives an easy interface to define metrics.
• Lightweight and database-free: Unlike other parameter tracking solutions, ZnTrack is lightweight and does not require any databases.

Getting Started

To get started with ZnTrack, you can install it via pip: pip install zntrack

Next, you can start using ZnTrack to track parameters, outputs and metrics in your Python code. Here's an example of how to use ZnTrack to track the value of a parameter in a Python class. Start in an empty directory and run git init and dvc init for preparation.

Then put the following into a python file called hello_world.py and call it with python hello_world.py.

import zntrack
from random import randrange


class HelloWorld(zntrack.Node):
    """Define a ZnTrack Node"""
    # parameter to be tracked
    max_number: int = zntrack.params()
    # parameter to store as output
    random_number: int = zntrack.outs()

    def run(self):
        """Command to be run by DVC"""
        self.random_number = randrange(self.max_number)

if __name__ == "__main__":
    # Write the computational graph
    with zntrack.Project() as project:
        hello_world = HelloWorld(max_number=512)
    project.run()

This will create a DVC stage HelloWorld. The workflow is defined in dvc.yaml and the parameters are stored in params.yaml.

This will run the workflow with dvc repro automatically. Once the graph is executed, the results, i.e. the random number can be accessed directly by the Node object.

hello_world.load()
print(hello_world.random_number)

Tip

You can easily load this Node directly from a repository.

import zntrack

node = zntrack.from_rev(
    "HelloWorld",
    remote="https://github.com/PythonFZ/ZnTrackExamples.git",
    rev="890c714",
)

Try accessing the max_number parameter and random_number output. All Nodes from this and many other repositories can be loaded like this.

An overview of all the ZnTrack features as well as more detailed examples can be found in the ZnTrack Documentation.

Wrap Python Functions

ZnTrack also provides tools to convert a Python function into a DVC Node. This approach is much more lightweight compared to the class-based approach with only a reduced set of functionality. Therefore, it is recommended for smaller nodes that do not need the additional toolset that the class-based approach provides.

from zntrack import nodify, NodeConfig
import pathlib

@nodify(outs=pathlib.Path("text.txt"), params={"text": "Lorem Ipsum"})
def write_text(cfg: NodeConfig):
    cfg.outs.write_text(
        cfg.params.text
    )
# build the DVC graph
with zntrack.Project() as project:
    write_text()
project.run()

The cfg dataclass passed to the function provides access to all configured files and parameters via dot4dict. The function body will be executed by the dvc repro command or if ran via write_text(run=True). All parameters are loaded from or stored in params.yaml.

Technical Details

ZnTrack as an Object-Relational Mapping for DVC

On a fundamental level the ZnTrack package provides an easy-to-use interface for DVC directly from Python. It handles all the computational overhead of reading config files, defining outputs in the dvc.yaml as well as in the script and much more.

For more information on DVC visit their homepage.

References

If you use ZnTrack in your research and find it helpful please cite us.

@misc{zillsZnTrackDataCode2024,
  title = {{{ZnTrack}} -- {{Data}} as {{Code}}},
  author = {Zills, Fabian and Sch{\"a}fer, Moritz and Tovey, Samuel and K{\"a}stner, Johannes and Holm, Christian},
  year = {2024},
  eprint={2401.10603},
  archivePrefix={arXiv},
}

Copyright

This project is distributed under the Apache License Version 2.0.

Similar Tools

The following (incomplete) list of other projects that either work together with ZnTrack or can achieve similar results with slightly different goals or programming languages.

• DVC - Main dependency of ZnTrack for Data Version Control.
• dvthis - Introduce DVC to R.
• DAGsHub Client - Logging parameters from within .Python
• MLFlow - A Machine Learning Lifecycle Platform.
• Metaflow - A framework for real-life data science.
• Hydra - A framework for elegantly configuring complex applications
• Snakemake - Workflow management system to create reproducible and scalable data analyses.