Skip to main content

zzz_deep_genome

一个辅助基因组学深度学习模型构建的函数库

A library of functions to assist in the construction of deep learning models for genomics.

主要功能(Key Features)

根据给定文件(bed、bigwig等)和条件(序列长度等),获取用于组学深度学习训练的训练集。

Obtain a training set for deep learning training in genomics based on a given file (bed, bigwig, etc.) and conditions (sequence length, etc.).

训练数据(label)的标准化。

Normalization of training data (label).

根据JASPAR数据库的pfms矩阵信息,构建用于初始化CNN的参数矩阵。

The parameter matrix for initializing the CNN is constructed based on the pfms matrix information from the JASPAR database.

获取一组或多组等长短序列对应的pfm、ppm、pwm矩阵。

Get the pfm, ppm, and pwm matrices corresponding to one or more sets of equal-length short sequences.

快速开始(Quick Start)

安装

获取训练数据集(Obtain training data set)

Download files

Download the file for your platform. If you're not sure which to choose, learn more about installing packages.

Source Distribution

zzx_deep_genome-0.0.1.tar.gz (9.3 kB view details)

Uploaded Source

Built Distribution

If you're not sure about the file name format, learn more about wheel file names.

zzx_deep_genome-0.0.1-py3-none-any.whl (10.2 kB view details)

Uploaded Python 3

File details

Details for the file zzx_deep_genome-0.0.1.tar.gz.

File metadata

  • Download URL: zzx_deep_genome-0.0.1.tar.gz
  • Upload date:
  • Size: 9.3 kB
  • Tags: Source
  • Uploaded using Trusted Publishing? No
  • Uploaded via: twine/3.4.1 importlib_metadata/3.10.0 pkginfo/1.5.0.1 requests/2.25.1 requests-toolbelt/0.9.1 tqdm/4.45.0 CPython/3.7.3

File hashes

Hashes for zzx_deep_genome-0.0.1.tar.gz
Algorithm Hash digest
SHA256 87525cfa36a1da6b16ba10a147b2fdacb4e4e45ea1c2a5d4131d89fd0c5007bd
MD5 5898db005795bb4f46ad6274c3685c8d
BLAKE2b-256 ba44f61b9c9597cb3891db549fa8abce1a297729df8dfcc8d9def05a2cfc7155

See more details on using hashes here.

File details

Details for the file zzx_deep_genome-0.0.1-py3-none-any.whl.

File metadata

  • Download URL: zzx_deep_genome-0.0.1-py3-none-any.whl
  • Upload date:
  • Size: 10.2 kB
  • Tags: Python 3
  • Uploaded using Trusted Publishing? No
  • Uploaded via: twine/3.4.1 importlib_metadata/3.10.0 pkginfo/1.5.0.1 requests/2.25.1 requests-toolbelt/0.9.1 tqdm/4.45.0 CPython/3.7.3

File hashes

Hashes for zzx_deep_genome-0.0.1-py3-none-any.whl
Algorithm Hash digest
SHA256 b562f02b3d6da546930e4e887445e66c43b7e9cbb764f645d57bd38513772a54
MD5 0bc27c57c2cc2f79a474617266640a5d
BLAKE2b-256 59399e12fd97d4e44f662e9bc2206015170344f07bcd11bee3de550445cca5b1

See more details on using hashes here.

Release history Release notifications | RSS feed

0.1.5

2 files

0.1.4

2 files

0.1.3

2 files

0.1.2

2 files

0.1.1

2 files

0.1.0

2 files

0.0.9

2 files

0.0.8

2 files

0.0.7

2 files

0.0.6

2 files

0.0.5

2 files

0.0.4

2 files

0.0.3

2 files

0.0.2

2 files

This release

0.0.1 This release

2 files

Anthropic, PBC Visionary sponsor Bloomberg Visionary sponsor Hudson River Trading Visionary sponsor Meta Visionary sponsor NVIDIA Visionary sponsor Microsoft Sustainability sponsor Depot Continuous Integration AWS Cloud computing and Security Sponsor Datadog Monitoring Fastly CDN Google Download Analytics Sentry Error logging StatusPage Status page