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243 projects.

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canarymd 0.1.0

A python client library that allows easy integration with Canary

cbs 1.0.0

List coverage blind spots

cellsystem 0.1.0

An agent-based framework for the simulation of biological cell systems and more.

ciles 0.1.0

Langevin integrator for SDEs with constant drift and diffusion on continuous intervals with circular boundary conditions.

CLASHChimeras 0.2

Python package to find chimeras in CRAC/CLASH and HITS-CLIP datasets

clintrials 0.1.4

clintrials is a library of clinical trial designs and methods in Python

CNVkit 0.9.3

Copy number variation toolkit for high-throughput sequencing.

codex 0.2.4

Denormalization of Common Data Model-formated electronic health records for time-oriented queries

CROC 1.1.26

A package for calculating ROC curves and Concentrated ROC (CROC) curves.

cruzdb 0.5.6

Interface to UCSC genomic databases. Also allows things like up/downstream/k-nearest-neighbor queries and mirroring of tables to local sqlite databases

csg-dicoms-anonymizer 1.4.2

Robust and easy to use generic dicoms anonymizer with demographics csv spreadsheet anonymization by hashed ids

Ctrax 0.5.8

Ctrax: The Caltech Multiple Fly Tracker

cubric-mrs 0.1.7

a collection of processing scripts for handling MRS data at CUBRIC

cwl-airflow-parser 1.0.20180220071453

Package extends Airflow functionality with CWL v1.0 support

cwltool 1.0.20180306163216

Common workflow language reference implementation

dcmfetch 0.1.8

DICOM query retrieve tools


DICOM Preprocessing Interface.

dcm-spec-tools 0.1.4

Python DICOM tools using input from DICOM specs in docbook format

ddrage 1.4.0

Simulator for ddRADseq (double digest restriction site associdated DNA squencing) datasets. Generates reads (FASTQ format) that can be analyzed and validated using a ground truth file (YAML).

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