Tools to analyze data structured as BIDS in Python
An ABAQUS plug-in to map bone properties from CT scans to 3D finite element bone/implant models
Medical Image Conversion and Input/Output Tools
Python binding for the C++ library Biomechanical ToolKit (BTK)
Basic library for interacting with the REST interface of XNAT.
A python client library that allows easy integration with Canary
List coverage blind spots
An agent-based framework for the simulation of biological cell systems and more.
Langevin integrator for SDEs with constant drift and diffusion on continuous intervals with circular boundary conditions.
Python package to find chimeras in CRAC/CLASH and HITS-CLIP datasets
clintrials is a library of clinical trial designs and methods in Python
Copy number variation toolkit for high-throughput sequencing.
Denormalization of Common Data Model-formated electronic health records for time-oriented queries
A package for calculating ROC curves and Concentrated ROC (CROC) curves.
Interface to UCSC genomic databases.
Also allows things like up/downstream/k-nearest-neighbor queries and mirroring
of tables to local sqlite databases
Robust and easy to use generic dicoms anonymizer with demographics csv spreadsheet anonymization by hashed ids
Ctrax: The Caltech Multiple Fly Tracker
a collection of processing scripts for handling MRS data at CUBRIC
Package extends Airflow functionality with CWL v1.0 support