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224 projects.

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classifiers 0.0.44

classifiers list from

clintrials 0.1.4

clintrials is a library of clinical trial designs and methods in Python

CNVkit 0.9.1

Copy number variation toolkit for targeted DNA sequencing.

codex 0.2.4

Denormalization of Common Data Model-formated electronic health records for time-oriented queries

CROC 1.1.26

A package for calculating ROC curves and Concentrated ROC (CROC) curves.

cruzdb 0.5.6

Interface to UCSC genomic databases. Also allows things like up/downstream/k-nearest-neighbor queries and mirroring of tables to local sqlite databases

csg-dicoms-anonymizer 1.4.1

Robust and easy to use generic dicoms anonymizer with demographics csv spreadsheet anonymization by hashed ids

Ctrax 0.5.8

Ctrax: The Caltech Multiple Fly Tracker

cubric-mrs 0.1.7

a collection of processing scripts for handling MRS data at CUBRIC

cwltool 1.0.20171107133715

Common workflow language reference implementation

dcmfetch 0.1.8

DICOM query retrieve tools


DICOM Preprocessing Interface.

dcm-spec-tools 0.1.4

Python DICOM tools using input from DICOM specs in docbook format

ddrage 1.4.0

Simulator for ddRADseq (double digest restriction site associdated DNA squencing) datasets. Generates reads (FASTQ format) that can be analyzed and validated using a ground truth file (YAML).

deduper 0.0.5

OneFlorida De-duplication Software

dicom 0.9.9.post1

Pure python package for DICOM medical file reading and writing

dicom2cloud 0.9

Platform independent GUI for anonymizing/uploading brain scans to an image processing cloud instance

dicom2nifti 1.2.19

package for converting dicom files to nifti

dicom-numpy 0.1.2

Extract image data into a 3D numpy array from a set of DICOM files.

dicompyler 0.4.2

Extensible radiation therapy research platform and viewer for DICOM and DICOM RT.

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