13 projects
esmecata
EsMeCaTa: Estimating Metabolic Capabilties from Taxonomy
sankeymien
Sankey diagram for Microbial Enrichment cultures.
bigecyhmm
Predict biogeochemical cycles from protein fasta files.
Metage2Metabo
Automatic reconstruction of draft metabolic networks with Pathway Tools and graph-based metabolic analysis
emapper2gbk
Build .gbk files starting from eggnog annotation files and genomes (fasta)
mpwt
Multiprocessing for Pathway Tools
kegg2bipartitegraph
Reconstruct metabolic bipartite graph using KEGG
padmet
The PADMet package allows conciliating genomics and metabolic network information used to produce a genome-scale constraint-based metabolic model within a database that traces all the reconstruction process steps. It allows representing the metabolic model in the form of a Wiki containing all the used/traced information. Other standard outputs are made available with the package.
Miscoto
Microbiome Screening and COmmunity selection using TOpology
MeneTools
Metabolic Network Topology Analysis Tools
aucome
Automatic Comparison of Metabolism
pathmodel
Ab initio pathway inference
padmet-utils
Modules to manage, explore and connect metabolic networks using Padmet and SBML formats
