11 projects
aviary-genome
aviary - metagenomics pipeline using long and short reads
binchicken
Bin Chicken - targeted recovery of low abundance metagenome assembled genomes through intelligent coassembly
singlem
Novelty-inclusive microbial community profiling of shotgun metagenomes
graftm
GraftM is a pipeline used for identifying and classifying marker gene reads from metagenomic datasets
kingfisher
Download/extract biological FASTA/Q read data and metadata
flight-genome
flight - metagenomic binner and variant clusterer.
ibis-genome
Ibis (Australian bin chicken) - targeted recovery of low abundance genomes through intelligent coassembly
cockatoo-genome
Cockatoo - intelligent clustering of metagenomic samples for coassembly
bird-tool-utils
Python utilities used as part of the bird suite of bioinformatic tools
argparse-manpage-birdtools
Format ROFF documents (manual page format) from python's ArgumentParser object.
extern
Opinionated version of Python's subprocess
