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Username    EdinburghGenomeFoundry
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42 projects

bandwitch

Last released

Enzyme selection for DNA verification and identification.

plateo

Last released

Read/write microplate and picklist data for lab automation

overhang

Last released

Compendium of overhangs

minotaor

Last released

Amino acid sequence annotator

tatapov

Last released

Tools for DNA overhang misannealing data.

seqreport

Last released

Simple reporting on a set of sequences for documentation purposes

bandwagon

Last released

Simulate DNA band patterns for gel migration experiments.

genedom

Last released

Genetic part standardization

dnaweaver

Last released

Make ordering and assembly plans for DNA sequences

dnacauldron

Last released

Cloning simulation for DNA assembly (Golden Gate, Gibson...)

crazydoc

Last released

Read genetic sequences from stylized docx files

easy-dna

Last released

Methods for DNA sequence reading, writing and editing.

snapgene-reader

Last released

Convert Snapgene *.dna files dict/json/biopython.

dnachisel

Last released

Optimize DNA sequences under constraints.

python-codon-tables

Last released

Codon Usage Tables for Python, from kazusa.or.jp

proglog

Last released

Log and progress bar manager for console, notebooks, web...

flametree

Last released

Python file and zip operations made easy

dna-features-viewer

Last released

Plot features from DNA sequences (e.g. Genbank) with Python

pdf-reports

Last released

Create nice-looking PDF reports from HTML content.

sequenticon

Last released

Generate human-friendly icons from DNA sequences

blabel

Last released

Generate multi-page, multi-label PDF files in Python.

caravagene

Last released

Plot multi-part genetic constructs.

primavera

Last released

Primer selection + data analysis for DNA assembly validation.

bioprinter

Last released

Print pictures with living micro-organisms!

zymp

Last released

Design compact sequences with many enzyme restriction sites.

saboteurs

Last released

Identify agents impairing success across experiments.

geneblocks

Last released

Library to compare DNA sequences (diff, common blocks, etc.)

crecombio

Last released

Site-specific DNA recombination simulator

genealloy

Last released

GeneAlloy helps designing overlapping sequences.

polymera

Last released

Representing ambiguous sequences written with complement alphabets.

dioscuri

Last released

Read/write Gemini WorkList (gwl) files.

plasmid-assessor

Last released

Plasmid assessment for Golden Gate cloning

ediacara

Last released

EGF's alignment reporter

goldenhinges

Last released

DNA overhang design for Golden Gate etc.

synbiopython

Last released

Python tools for Synthetic Biology.

epijinn

Last released

DNA methylation and restriction

topkappy

Last released

Pythonic wrapper for the Kappa language (bio simulations)

python-lala

Last released

Library of web access log analysis

kappagate

Last released

Predict valid-clone-rates in Golden Gate DNA assemblies

icebreaker

Last released

Python API for the JBEI ICE sample manager.

genome_collector

Last released

Easily download and store taxID genomes from NCBI

taskpacker

Last released

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