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Username    EdinburghGenomeFoundry
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39 projects

overhang

Last released

Compendium of overhangs

dnachisel

Last released

Optimize DNA sequences under constraints.

synbiopython

Last released

Python tools for Synthetic Biology.

epijinn

Last released

DNA methylation and restriction

minotaor

Last released

Amino acid sequence annotator

crecombio

Last released

Site-specific DNA recombination simulator

caravagene

Last released

tatapov

Last released

Provides DNA overhang misannealing data (Potapov 2018).

dnacauldron

Last released

Cloning simulation for DNA assembly (Golden Gate, Gibson...)

dioscuri

Last released

Read/write Gemini WorkList (gwl) files.

polymera

Last released

Representing ambiguous sequences written with complement alphabets.

plateo

Last released

Read/write microplate and picklist data for lab automation

DnaWeaver

Last released

Make ordering and assembly plans for DNA sequences

genedom

Last released

Genetic parts standardization

bandwitch

Last released

Enzyme selection for DNA verification and identification

dna-features-viewer

Last released

Plot features from DNA sequences (e.g. Genbank) with Python

snapgene-reader

Last released

Convert Snapgene *.dna files dict/json/biopython.

topkappy

Last released

Pythonic wrapper for the Kappa language (bio simulations)

easy-dna

Last released

Methods for DNA sequence reading, writing and editing.

crazydoc

Last released

Read genetic sequences from stylized docx files

flametree

Last released

Python file and zip operations made easy

goldenhinges

Last released

DNA overhangs design for Golden Gate etc.

zymp

Last released

Design compact sequences with many enzyme restriction sites.

bioprinter

Last released

saboteurs

Last released

Identify agents impairing success accross experiments.

geneblocks

Last released

Library to compare DNA sequences (diff, common blocks, etc.)

python-codon-tables

Last released

Codon Usage Tables for Python, from kazusa.or.jp

bandwagon

Last released

Simulate DNA band patterns for gel migration experiments

blabel

Last released

Generate multi-page, multi-label pdfs in Python.

python-lala

Last released

Library of web access log analysis

genealloy

Last released

GeneAlloy helps designing overlapping sequences.

kappagate

Last released

Predict valid-clone-rates in Golden Gate DNA assemblies

pdf_reports

Last released

Create nice-looking PDF reports from HTML content.

primavera

Last released

Primer selection + data analysis for DNA assembly validation

icebreaker

Last released

Python API for the JBEI ICE sample manager.

genome_collector

Last released

Easily download and store taxID genomes from NCBI

sequenticon

Last released

Generate human-friendly icons from DNA sequences

proglog

Last released

Log and progress bar manager for console, notebooks, web...

taskpacker

Last released

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