Compendium of overhangs
Optimize DNA sequences under constraints.
Python tools for Synthetic Biology.
DNA methylation and restriction
Amino acid sequence annotator
Site-specific DNA recombination simulator
Provides DNA overhang misannealing data (Potapov 2018).
Cloning simulation for DNA assembly (Golden Gate, Gibson...)
Read/write Gemini WorkList (gwl) files.
Representing ambiguous sequences written with complement alphabets.
Read/write microplate and picklist data for lab automation
Make ordering and assembly plans for DNA sequences
Genetic parts standardization
Enzyme selection for DNA verification and identification
Plot features from DNA sequences (e.g. Genbank) with Python
Convert Snapgene *.dna files dict/json/biopython.
Pythonic wrapper for the Kappa language (bio simulations)
Methods for DNA sequence reading, writing and editing.
Read genetic sequences from stylized docx files
Python file and zip operations made easy
DNA overhangs design for Golden Gate etc.
Design compact sequences with many enzyme restriction sites.
Identify agents impairing success accross experiments.
Library to compare DNA sequences (diff, common blocks, etc.)
Codon Usage Tables for Python, from kazusa.or.jp
Simulate DNA band patterns for gel migration experiments
Generate multi-page, multi-label pdfs in Python.
Library of web access log analysis
GeneAlloy helps designing overlapping sequences.
Predict valid-clone-rates in Golden Gate DNA assemblies
Create nice-looking PDF reports from HTML content.
Primer selection + data analysis for DNA assembly validation
Python API for the JBEI ICE sample manager.
Easily download and store taxID genomes from NCBI
Generate human-friendly icons from DNA sequences
Log and progress bar manager for console, notebooks, web...