42 projects
bandwitch
Enzyme selection for DNA verification and identification.
plateo
Read/write microplate and picklist data for lab automation
overhang
Compendium of overhangs
minotaor
Amino acid sequence annotator
tatapov
Tools for DNA overhang misannealing data.
seqreport
Simple reporting on a set of sequences for documentation purposes
bandwagon
Simulate DNA band patterns for gel migration experiments.
genedom
Genetic part standardization
dnaweaver
Make ordering and assembly plans for DNA sequences
dnacauldron
Cloning simulation for DNA assembly (Golden Gate, Gibson...)
crazydoc
Read genetic sequences from stylized docx files
easy-dna
Methods for DNA sequence reading, writing and editing.
snapgene-reader
Convert Snapgene *.dna files dict/json/biopython.
dnachisel
Optimize DNA sequences under constraints.
python-codon-tables
Codon Usage Tables for Python, from kazusa.or.jp
proglog
Log and progress bar manager for console, notebooks, web...
flametree
Python file and zip operations made easy
dna-features-viewer
Plot features from DNA sequences (e.g. Genbank) with Python
pdf-reports
Create nice-looking PDF reports from HTML content.
sequenticon
Generate human-friendly icons from DNA sequences
blabel
Generate multi-page, multi-label PDF files in Python.
caravagene
Plot multi-part genetic constructs.
primavera
Primer selection + data analysis for DNA assembly validation.
bioprinter
Print pictures with living micro-organisms!
zymp
Design compact sequences with many enzyme restriction sites.
saboteurs
Identify agents impairing success across experiments.
geneblocks
Library to compare DNA sequences (diff, common blocks, etc.)
crecombio
Site-specific DNA recombination simulator
genealloy
GeneAlloy helps designing overlapping sequences.
polymera
Representing ambiguous sequences written with complement alphabets.
dioscuri
Read/write Gemini WorkList (gwl) files.
plasmid-assessor
Plasmid assessment for Golden Gate cloning
ediacara
EGF's alignment reporter
goldenhinges
DNA overhang design for Golden Gate etc.
synbiopython
Python tools for Synthetic Biology.
epijinn
DNA methylation and restriction
topkappy
Pythonic wrapper for the Kappa language (bio simulations)
python-lala
Library of web access log analysis
kappagate
Predict valid-clone-rates in Golden Gate DNA assemblies
icebreaker
Python API for the JBEI ICE sample manager.
genome_collector
Easily download and store taxID genomes from NCBI
