41 projects
snapgene-reader
Convert Snapgene *.dna files dict/json/biopython.
pdf-reports
Create nice-looking PDF reports from HTML content.
dna-features-viewer
Plot features from DNA sequences (e.g. Genbank) with Python
ediacara
EGF's alignment reporter
dnacauldron
Cloning simulation for DNA assembly (Golden Gate, Gibson...)
caravagene
dnachisel
Optimize DNA sequences under constraints.
crazydoc
Read genetic sequences from stylized docx files
easy-dna
Methods for DNA sequence reading, writing and editing.
overhang
Compendium of overhangs
DnaWeaver
Make ordering and assembly plans for DNA sequences
bandwitch
Enzyme selection for DNA verification and identification
plateo
Read/write microplate and picklist data for lab automation
goldenhinges
DNA overhang design for Golden Gate etc.
geneblocks
Library to compare DNA sequences (diff, common blocks, etc.)
bioprinter
primavera
Primer selection + data analysis for DNA assembly validation
polymera
Representing ambiguous sequences written with complement alphabets.
dioscuri
Read/write Gemini WorkList (gwl) files.
genealloy
GeneAlloy helps designing overlapping sequences.
crecombio
Site-specific DNA recombination simulator
minotaor
Amino acid sequence annotator
saboteurs
Identify agents impairing success across experiments.
blabel
Generate multi-page, multi-label pdfs in Python.
zymp
Design compact sequences with many enzyme restriction sites.
bandwagon
Simulate DNA band patterns for gel migration experiments
tatapov
Provides DNA overhang misannealing data (Potapov 2018).
genedom
Genetic parts standardization
sequenticon
Generate human-friendly icons from DNA sequences
python-codon-tables
Codon Usage Tables for Python, from kazusa.or.jp
proglog
Log and progress bar manager for console, notebooks, web...
flametree
Python file and zip operations made easy
plasmid-assessor
Plasmid assessment for Golden Gate cloning
synbiopython
Python tools for Synthetic Biology.
epijinn
DNA methylation and restriction
topkappy
Pythonic wrapper for the Kappa language (bio simulations)
python-lala
Library of web access log analysis
kappagate
Predict valid-clone-rates in Golden Gate DNA assemblies
icebreaker
Python API for the JBEI ICE sample manager.
genome_collector
Easily download and store taxID genomes from NCBI