overhang

Last released Jul 8, 2021

Compendium of overhangs

dnachisel

Last released Jun 16, 2021

Optimize DNA sequences under constraints.

synbiopython

Last released Mar 16, 2021

Python tools for Synthetic Biology.

epijinn

Last released Mar 12, 2021

DNA methylation and restriction

minotaor

Last released Mar 11, 2021

Amino acid sequence annotator

crecombio

Last released Feb 24, 2021

Site-specific DNA recombination simulator

caravagene

Last released Feb 22, 2021

tatapov

Last released Jan 22, 2021

Provides DNA overhang misannealing data (Potapov 2018).

dnacauldron

Last released Dec 11, 2020

Cloning simulation for DNA assembly (Golden Gate, Gibson...)

dioscuri

Last released Oct 11, 2020

Read/write Gemini WorkList (gwl) files.

polymera

Last released Oct 9, 2020

Representing ambiguous sequences written with complement alphabets.

plateo

Last released Sep 29, 2020

Read/write microplate and picklist data for lab automation

DnaWeaver

Last released Sep 28, 2020

Make ordering and assembly plans for DNA sequences

genedom

Last released Sep 20, 2020

Genetic parts standardization

bandwitch

Last released Sep 20, 2020

Enzyme selection for DNA verification and identification

dna-features-viewer

Last released Sep 20, 2020

Plot features from DNA sequences (e.g. Genbank) with Python

snapgene-reader

Last released Sep 20, 2020

Convert Snapgene *.dna files dict/json/biopython.

topkappy

Last released Sep 18, 2020

Pythonic wrapper for the Kappa language (bio simulations)

easy-dna

Last released Sep 16, 2020

Methods for DNA sequence reading, writing and editing.

crazydoc

Last released Sep 16, 2020

Read genetic sequences from stylized docx files

flametree

Last released Sep 12, 2020

Python file and zip operations made easy

goldenhinges

Last released Sep 11, 2020

DNA overhangs design for Golden Gate etc.

zymp

Last released Sep 11, 2020

Design compact sequences with many enzyme restriction sites.

bioprinter

Last released Sep 11, 2020

saboteurs

Last released Sep 10, 2020

Identify agents impairing success accross experiments.

geneblocks

Last released Sep 9, 2020

Library to compare DNA sequences (diff, common blocks, etc.)

python-codon-tables

Last released Sep 6, 2020

Codon Usage Tables for Python, from kazusa.or.jp

bandwagon

Last released Sep 5, 2020

Simulate DNA band patterns for gel migration experiments

blabel

Last released Sep 4, 2020

Generate multi-page, multi-label pdfs in Python.

python-lala

Last released Sep 2, 2020

Library of web access log analysis

genealloy

Last released Mar 15, 2020

GeneAlloy helps designing overlapping sequences.

kappagate

Last released Feb 3, 2020

Predict valid-clone-rates in Golden Gate DNA assemblies

pdf_reports

Last released Feb 1, 2020

Create nice-looking PDF reports from HTML content.

primavera

Last released Jan 31, 2020

Primer selection + data analysis for DNA assembly validation

icebreaker

Last released Nov 18, 2019

Python API for the JBEI ICE sample manager.

genome_collector

Last released Nov 12, 2019

Easily download and store taxID genomes from NCBI

sequenticon

Last released Jul 18, 2018

Generate human-friendly icons from DNA sequences

proglog

Last released May 29, 2018

Log and progress bar manager for console, notebooks, web...

taskpacker

Last released Nov 20, 2017