29 projects
snapgene_reader
Convert Snapgene *.dna files dict/json/biopython.
dnacauldron
DNA cloning simulation for restriction based assembly and more
primavera
Primer selection + data analysis for DNA assembly validation
dnachisel
Optimize DNA sequences under constraints.
dna_features_viewer
Plot features from DNA sequences (e.g. Genbank) with Python
kappagate
Predict valid-clone-rates in Golden Gate DNA assemblies
topkappy
Pythonic wrapper for the Kappa language (bio simulations)
DnaWeaver
Make ordering and assembly plans for DNA sequences
genedom
Genetic parts standardization
goldenhinges
DNA overhangs design for Golden Gate etc.
geneblocks
Library to compare DNA sequences (diff, common blocks, etc.)
tatapov
Provides DNA overhang misannealing data (Potatov 2018).
python_codon_tables
Codon Usage Tables for Python, from kazusa.or.jp
pdf_reports
Create nice-looking PDF reports from HTML content.
plateo
Read/write microplate and picklist data for lab automation
bandwagon
Simulate DNA band patterns for gel migration experiments
bioprinter
zymp
Design compact sequences with many enzyme restriction sites.
saboteurs
Identify agents impairing success accross experiments.
blabel
Generate multi-page, multi-label pdfs in Python.
icebreaker
Python API for the JBEI ICE sample manager.
flametree
Python file and zip operations made easy
caravagene
sequenticon
Generate human-friendly icons from DNA sequences
proglog
Log and progress bar manager for console, notebooks, web...
python-lala
Library of web access log analysis
bandwitch
Enzyme selection for DNA verification and identification
crazydoc
Read genetic sequences from stylized docx files
