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Username    EdinburghGenomeFoundry
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40 projects

overhang

Last released

Compendium of overhangs

DnaWeaver

Last released

Make ordering and assembly plans for DNA sequences

bandwitch

Last released

Enzyme selection for DNA verification and identification

plateo

Last released

Read/write microplate and picklist data for lab automation

dnacauldron

Last released

Cloning simulation for DNA assembly (Golden Gate, Gibson...)

goldenhinges

Last released

DNA overhang design for Golden Gate etc.

geneblocks

Last released

Library to compare DNA sequences (diff, common blocks, etc.)

bioprinter

Last released

caravagene

Last released

primavera

Last released

Primer selection + data analysis for DNA assembly validation

polymera

Last released

Representing ambiguous sequences written with complement alphabets.

dioscuri

Last released

Read/write Gemini WorkList (gwl) files.

genealloy

Last released

GeneAlloy helps designing overlapping sequences.

crecombio

Last released

Site-specific DNA recombination simulator

minotaor

Last released

Amino acid sequence annotator

saboteurs

Last released

Identify agents impairing success across experiments.

blabel

Last released

Generate multi-page, multi-label pdfs in Python.

zymp

Last released

Design compact sequences with many enzyme restriction sites.

bandwagon

Last released

Simulate DNA band patterns for gel migration experiments

tatapov

Last released

Provides DNA overhang misannealing data (Potapov 2018).

genedom

Last released

Genetic parts standardization

sequenticon

Last released

Generate human-friendly icons from DNA sequences

dnachisel

Last released

Optimize DNA sequences under constraints.

python-codon-tables

Last released

Codon Usage Tables for Python, from kazusa.or.jp

proglog

Last released

Log and progress bar manager for console, notebooks, web...

pdf-reports

Last released

Create nice-looking PDF reports from HTML content.

dna-features-viewer

Last released

Plot features from DNA sequences (e.g. Genbank) with Python

crazydoc

Last released

Read genetic sequences from stylized docx files

easy-dna

Last released

Methods for DNA sequence reading, writing and editing.

snapgene-reader

Last released

Convert Snapgene *.dna files dict/json/biopython.

flametree

Last released

Python file and zip operations made easy

plasmid-assessor

Last released

Plasmid assessment for Golden Gate cloning

synbiopython

Last released

Python tools for Synthetic Biology.

epijinn

Last released

DNA methylation and restriction

topkappy

Last released

Pythonic wrapper for the Kappa language (bio simulations)

python-lala

Last released

Library of web access log analysis

kappagate

Last released

Predict valid-clone-rates in Golden Gate DNA assemblies

icebreaker

Last released

Python API for the JBEI ICE sample manager.

genome_collector

Last released

Easily download and store taxID genomes from NCBI

taskpacker

Last released

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