overhang

Last released Aug 8, 2022

Compendium of overhangs

DnaWeaver

Last released Aug 3, 2022

Make ordering and assembly plans for DNA sequences

bandwitch

Last released Jun 14, 2022

Enzyme selection for DNA verification and identification

plateo

Last released Jun 13, 2022

Read/write microplate and picklist data for lab automation

dnacauldron

Last released Jun 10, 2022

Cloning simulation for DNA assembly (Golden Gate, Gibson...)

goldenhinges

Last released Jun 8, 2022

DNA overhang design for Golden Gate etc.

geneblocks

Last released Jun 8, 2022

Library to compare DNA sequences (diff, common blocks, etc.)

bioprinter

Last released May 26, 2022

caravagene

Last released May 10, 2022

primavera

Last released May 10, 2022

Primer selection + data analysis for DNA assembly validation

polymera

Last released May 10, 2022

Representing ambiguous sequences written with complement alphabets.

dioscuri

Last released May 9, 2022

Read/write Gemini WorkList (gwl) files.

genealloy

Last released May 9, 2022

GeneAlloy helps designing overlapping sequences.

crecombio

Last released May 9, 2022

Site-specific DNA recombination simulator

minotaor

Last released May 9, 2022

Amino acid sequence annotator

saboteurs

Last released May 9, 2022

Identify agents impairing success across experiments.

blabel

Last released May 8, 2022

Generate multi-page, multi-label pdfs in Python.

zymp

Last released May 7, 2022

Design compact sequences with many enzyme restriction sites.

bandwagon

Last released May 7, 2022

Simulate DNA band patterns for gel migration experiments

tatapov

Last released May 6, 2022

Provides DNA overhang misannealing data (Potapov 2018).

genedom

Last released May 6, 2022

Genetic parts standardization

sequenticon

Last released May 5, 2022

Generate human-friendly icons from DNA sequences

dnachisel

Last released May 5, 2022

Optimize DNA sequences under constraints.

python-codon-tables

Last released May 5, 2022

Codon Usage Tables for Python, from kazusa.or.jp

proglog

Last released May 5, 2022

Log and progress bar manager for console, notebooks, web...

pdf-reports

Last released May 5, 2022

Create nice-looking PDF reports from HTML content.

dna-features-viewer

Last released May 5, 2022

Plot features from DNA sequences (e.g. Genbank) with Python

crazydoc

Last released May 4, 2022

Read genetic sequences from stylized docx files

easy-dna

Last released May 4, 2022

Methods for DNA sequence reading, writing and editing.

snapgene-reader

Last released May 4, 2022

Convert Snapgene *.dna files dict/json/biopython.

flametree

Last released May 4, 2022

Python file and zip operations made easy

plasmid-assessor

Last released Oct 6, 2021

Plasmid assessment for Golden Gate cloning

synbiopython

Last released Mar 16, 2021

Python tools for Synthetic Biology.

epijinn

Last released Mar 12, 2021

DNA methylation and restriction

topkappy

Last released Sep 18, 2020

Pythonic wrapper for the Kappa language (bio simulations)

python-lala

Last released Sep 2, 2020

Library of web access log analysis

kappagate

Last released Feb 3, 2020

Predict valid-clone-rates in Golden Gate DNA assemblies

icebreaker

Last released Nov 18, 2019

Python API for the JBEI ICE sample manager.

genome_collector

Last released Nov 12, 2019

Easily download and store taxID genomes from NCBI

taskpacker

Last released Nov 20, 2017