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  EdinburghGenomeFoundry

  Joined on Sep 7, 2016

29 projects

snapgene_reader

Last released on May 22, 2019

Convert Snapgene *.dna files dict/json/biopython.

dnacauldron

Last released on May 22, 2019

DNA cloning simulation for restriction based assembly and more

primavera

Last released on May 15, 2019

Primer selection + data analysis for DNA assembly validation

dnachisel

Last released on May 15, 2019

Optimize DNA sequences under constraints.

dna_features_viewer

Last released on May 15, 2019

Plot features from DNA sequences (e.g. Genbank) with Python

kappagate

Last released on May 14, 2019

Predict valid-clone-rates in Golden Gate DNA assemblies

topkappy

Last released on May 14, 2019

Pythonic wrapper for the Kappa language (bio simulations)

DnaWeaver

Last released on May 9, 2019

Make ordering and assembly plans for DNA sequences

genedom

Last released on Mar 25, 2019

Genetic parts standardization

goldenhinges

Last released on Mar 25, 2019

DNA overhangs design for Golden Gate etc.

geneblocks

Last released on Mar 11, 2019

Library to compare DNA sequences (diff, common blocks, etc.)

tatapov

Last released on Feb 27, 2019

Provides DNA overhang misannealing data (Potatov 2018).

python_codon_tables

Last released on Feb 25, 2019

Codon Usage Tables for Python, from kazusa.or.jp

pdf_reports

Last released on Feb 23, 2019

Create nice-looking PDF reports from HTML content.

plateo

Last released on Feb 13, 2019

Read/write microplate and picklist data for lab automation

bandwagon

Last released on Feb 13, 2019

Simulate DNA band patterns for gel migration experiments

bioprinter

Last released on Feb 5, 2019

zymp

Last released on Jan 21, 2019

Design compact sequences with many enzyme restriction sites.

saboteurs

Last released on Dec 17, 2018

Identify agents impairing success accross experiments.

blabel

Last released on Nov 15, 2018

Generate multi-page, multi-label pdfs in Python.

icebreaker

Last released on Oct 3, 2018

Python API for the JBEI ICE sample manager.

flametree

Last released on Aug 9, 2018

Python file and zip operations made easy

caravagene

Last released on Jul 19, 2018

sequenticon

Last released on Jul 18, 2018

Generate human-friendly icons from DNA sequences

proglog

Last released on May 29, 2018

Log and progress bar manager for console, notebooks, web...

python-lala

Last released on Apr 27, 2018

Library of web access log analysis

bandwitch

Last released on Feb 17, 2018

Enzyme selection for DNA verification and identification

crazydoc

Last released on Feb 16, 2018

Read genetic sequences from stylized docx files

taskpacker

Last released on Nov 20, 2017

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