23 projects
napatrackmater
Import Trackmate XML files for Track Visualization and analysis in Napari.
vollseg
Segmentation tool for biological cells of irregular size and shape in 3D and 2D.
KapoorLabs-Lightning
Lightning modules for KapoorLabs specific projects
vollseg-napari-trackmate
Track analysis using TrackMate xml and csv generated tracks using NapaTrackMater as the base library
oneat
Action classification for TZYX/TYX shaped images, Static classification for TYX/YX shaped images
caped-ai-tabulour
A base table widget for KapoorLabs Napari plugins
caped-ai-metrics
Metric computation toolkit for segmentation and classification tasks
vollseg-napari-mtrack
Segment kymographs of microtubules, actin filaments and perform Ransac based fits to compute dynamic instability parameters for individual kymographs and also in batch
quartic-solver-kapoorlabs
A package containing methods for solving quartic, cubic, quadratic, and depressed equations.
vollseg-napari
Irregular cell shape segmentation using VollSeg
caped-ai-augmentations
Augmentations for volume, planar segmentation, classification image segmentation and associated csv file of oneat clicks.
caped-ai
Content aware prediction and detection based on artificial intelligence.
caped-ai-sentinal
A wrapper function package to call Sentinal library for training
caped-ai-mtrack
Ransac based methods for function fits on segmentation of kymographs of actin and microtubules as a library package
cellpose-vollseg
modification of cellpose algorithm
caped-ai-visualizations
Visualization toolkit for oneat bounding boxes, activation functions, vollseg visualization
viz-oneat
Neural network activation visualization tool.
oneat-augmentations
Augmentations for volume, planar segmentation, classification image segmentation and associated csv file of oneat clicks.
slimoneat
Static and Dynamic classification tool.
oneat-slim
Static and Dynamic classification tool.
pyfiji
Python scripts as precursor to Fiji plugins
pecowaco
Analysis of Periodic contractions
embryoseg
SmartSeed Segmentation for animal embryonic cells.
