Skip to main content
Avatar for Guanliang MENG from gravatar.com

Guanliang MENG

Username    GuanliangMENG
Date joined   Joined

19 projects

bold-identification

Last released

To get taxa information of sequences from BOLD system

gbseqextractor

Last released

Extract any CDS or rNRA or tRNA DNA sequences of genes from Genbank file.

mglcmdtools

Last released

common cmd tools to be used in Python3 scripts. By Guanliang MENG, see https://github.com/linzhi2013/mglcmdtools.

taxonomy-ranks

Last released

To get taxonomy ranks information with ETE3 from NCBI Taxonomy database.

batch-run-cmd

Last released

To run commands line by line, and check each exit status

extract-codon-alignment

Last released

To extract some codon positions (1st, 2nd, 3rd) from a CDS alignment.

batch-tar

Last released

To tar/compress files/directories in batch mode.

extractfq

Last released

Extract some fastq reads (PE/SE) from the beginning of the files

sgejob

Last released

To collect SGE job information with a damemon

depth-stat

Last released

To extract the sequence depth from depthfile.

polish-genbank

Last released

To check for the internal stop codon in Genbank or FASTA file (CDS), then substitute the internal stop codon with NNN.

cigar-coordinates

Last released

To get the coordinates of a given CIGAR string. By Guanliang MENG, see https://github.com/linzhi2013/cigar_coordinates.

msa-cigars

Last released

To return CIGAR strings of a multiple sequences alignment

breakSeqInNs-then-translate

Last released

To filter the sequences by translating the protein coding genes (PCGs) with proper genetic code table, if one of the PCGs has interal stop codon, filter out this sequence. See https://github.com/linzhi2013/breakSeqInNs_then_translate

extract-fasta-seq

Last released

To extract specific fasta sequences from a fasta file. By Guanliang MENG, see https://github.com/linzhi2013

extract-specific-lines

Last released

to get specific lines from the subject file which maps the query ids. Written by Guanliang MENG

extract-specific-sites-from-msa

Last released

To extract some sites from a multiple sequence alignment. By Guanliang MENG, go to https://github.com/linzhi2013 for more details.

atgcN-count

Last released

To stat the counts and percentage of each base in fasta file

msaconverter

Last released

To convert multiple alignment sequences (msa) to different format

Supported by

AWS AWS Cloud computing Datadog Datadog Monitoring DigiCert DigiCert EV certificate Facebook / Instagram Facebook / Instagram PSF Sponsor Fastly Fastly CDN Google Google Object Storage and Download Analytics Microsoft Microsoft PSF Sponsor Pingdom Pingdom Monitoring Salesforce Salesforce PSF Sponsor Sentry Sentry Error logging StatusPage StatusPage Status page