13 projects
toil-batch-system-tes
A TES batch system plugin for Toil
bgzip
Utilities working with blocked gzip streams.
toil
Pipeline management software for clusters.
braingeneers
Braingeneers Python utilities
terra-notebook-utils
Utilities for the Terra notebook environment.
getm
Download data from URLs quickly, with integrity
xsamtools
Lightly modified versions of samtools, htslib, and bcftools.
terra-pandas
Tools work with Terra data tables in Pandas
herzog
Generate Jupyter notebooks.
gs-chunked-io
Streaming read/writes to Google Storage blobs with ascynchronous buffering.
toil-rnaseq
UC Santa Cruz Computational Genomics Lab's Toil-based RNA-seq workflow
toil-lib
A common library for functions and tools used in toil-based pipelines
toil-scripts
A repository of genomic workflows developed by the UCSC Computational Genomics lab