17 projects
gpu-tracker
Tracks computational resources of a process and its child processes, most prominently GPU RAM, as well as RAM, compute time, and CPU utilization.
academic-tracker
Find publications on PubMed, Crossref, ORCID, and Google Scholar for given authors or references.
icikt
Python tool to calculate the KendallTau correlation coefficients.
messes
Extract, validate, and convert tabular data for deposition into repositories.
pdb-eda
Methods for analyzing electron density maps in wwPDB
kegg-pull
Pulls any and all entries from any and all KEGG databases, pulls KEGG entry IDs, and wraps all the KEGG REST API operations in both Python API and the command line.
GOcats
A tool for categorizing Gene Ontology into subgraphs of user-defined emergent concepts
miagis
Build and validate GIS metadata.
mwtab
Parser for mwtab files from the Metabolomics Workbench
ctfile
Parser for chemical table file (CTfile) a family of text-based chemical file formats (e.g. Molfile, SDfile) that describe molecules and chemical reactions.
moiety-modeling
Moiety Modeling Implementation
isoenum-webgui
Web interface to generate NMR-specific InChI
isoenum
InChI generator.
SAGA-optimize
Optimization method for solving boundary-value inverse problem based on a combined simulated annealing and genetic algorithm
filehandles
filehandles is a file handle manager that let you get file handles from different sources.
jpredapi
Python library for submitting jobs to JPRED - A Protein Secondary Structure Prediction Server
nmrstarlib
Python library for parsing data from NMR-STAR format files
