9 projects
gene-loci-comparison
Create fancy (bokeh) gene locus plots from GenBank files
scoary-2
Scoary2: Associate genes with traits!
mgwas-data-exploration-app
Data exploration app for large phenotypic datasets analyzed using mGWAS, originally developed for Scoary2
binary-file-search
Binary search algorithm for big sorted files that cannot be read into RAM.
opengenomebrowser-tools
Set of scripts to aid OpenGenomeBrowser administrators import data
gendiscalpy
Python bindings to GenDisCal and addition of phylogenetic tree function
orthofinder-tools
Annotate orthogenes and create Roary-like plots
fast-fisher
Calculate Fisher's exact test very quickly.
cached-contingency
Compute and cache Fisher's exact test and Boschloo's test more efficiently!
