9 projects
omicidx
The OmicIDX project collects, reprocesses, and then republishes metadata from multiple public genomics repositories. Included are the NCBI SRA, Biosample, and GEO databases. Publication is via the cloud data warehouse platform Bigquery, a set of performant search and retrieval APIs, and a set of json-format files for easy incorporation into other projects.
ncbi-mesh-parser
Parse NCBI MeSH XML files
omicidx-sra
textvision
textvision uses the Google Vision API to perform OCR and return text.
omicidx-builder
Tooling to build and deploy omicidx data and resources
sd-cloud-utils
SDST
Useful routines to perform NGS data analysis tasks
ngCGH
Pseudo-cgh of next-generation sequencing data
CompleteGenomicsTools
Tools for manipulating and visualizing data from Complete Genomics