The OmicIDX project collects, reprocesses, and then republishes metadata from multiple public genomics repositories. Included are the NCBI SRA, Biosample, and GEO databases. Publication is via the cloud data warehouse platform Bigquery, a set of performant search and retrieval APIs, and a set of json-format files for easy incorporation into other projects.
Tooling to build and deploy omicidx data and resources
Useful routines to perform NGS data analysis tasks
Pseudo-cgh of next-generation sequencing data
Tools for manipulating and visualizing data from Complete Genomics