15 projects
phylodm
Efficient calculation of phylogenetic distance matrices.
gtdbtk
A toolkit for assigning objective taxonomic classifications to bacterial and archaeal genomes.
magna
Magna is a collection of commands that I frequently use in bioinformatics and day-to-day life.
chiton
Chiton provides a Python wrapper to commonly used bioinformatics programs.
phylorank
Assigns taxonomic ranks based on evolutionary divergence.
gtdb-validation-tk
A toolbox for validating the GTDB taxonomy.
fastani
A wrapper to the FastANI program.
python-template-test-pkg
Description
foobartestignore
biolib
Package for common tasks in bioinformatics.
deltapd
deltapd
corejam
corejam
metatree
Visualisation of polyphyletic groups between phylogenetic trees to a reference tree.
GenomeTreeTk
A toolbox for working with genome trees.
vtracker
For tracking the relationship between group membership changes across versions.
