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Username    adamkoziol
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23 projects

strainchoosr

Last released

This package was originally created by Andrew Low. Now maintained by Adam Koziol.

AlleleFinder

Last released

None

MiSeqHashR

Last released

confindr

Last released

OLCTools

Last released

genemethods

Last released

in-silico-pcr

Last released

COWBAT

Last released

CFIA OLC Workflow for Bacterial Assembly and Typing

sistr-cmd-olc

Last released

Serovar predictions from Salmonella whole-genome sequence assemblies by determination of antigen geneand cgMLST gene alleles using BLAST. Mash MinHash can also be used for serovar prediction.

sipprverse

Last released

Object oriented raw read typing software

AMR-Summary

Last released

geneseekr

Last released

genewrappers

Last released

None

vsnpdev

Last released

USDA APHIS Veterinary Services (VS) Mycobacterium tuberculosis complex, mainly M. bovis, and Brucella sp. SNP pipeline. Genotyping from whole genome sequence (WGS) outputting BAM, VCF, SNP tables and phylogentic trees.

validator_helper

Last released

ftir-renamer

Last released

File renamer for FTIR files

virus_typer

Last released

GenomeQAML

Last released

CFIA OLC Genome Quality Assessment with Machine Learning

fetagenome

Last released

KubeJobSub

Last released

sigseekr

Last released

cowbathybrid

Last released

plasmidextractor

Last released

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