23 projects
strainchoosr
This package was originally created by Andrew Low. Now maintained by Adam Koziol.
AlleleFinder
None
MiSeqHashR
confindr
OLCTools
genemethods
in-silico-pcr
COWBAT
CFIA OLC Workflow for Bacterial Assembly and Typing
sistr-cmd-olc
Serovar predictions from Salmonella whole-genome sequence assemblies by determination of antigen geneand cgMLST gene alleles using BLAST. Mash MinHash can also be used for serovar prediction.
sipprverse
Object oriented raw read typing software
AMR-Summary
geneseekr
genewrappers
None
vsnpdev
USDA APHIS Veterinary Services (VS) Mycobacterium tuberculosis complex, mainly M. bovis, and Brucella sp. SNP pipeline. Genotyping from whole genome sequence (WGS) outputting BAM, VCF, SNP tables and phylogentic trees.
validator_helper
ftir-renamer
File renamer for FTIR files
virus_typer
GenomeQAML
CFIA OLC Genome Quality Assessment with Machine Learning