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Adam Tyson

Username    adamltyson
Date joined   Joined

35 projects

brainreg

Last released

Automated 3D brain registration

imio

Last released

Loading and saving of image data.

cellshape-cloud

Last released

3D cell shape analysis using geometric deep learning on point clouds

cellshape-cluster

Last released

3D shape analysis using deep learning

brainreg-napari

Last released

Multi-atlas whole-brain microscopy registration

cellshape-voxel

Last released

3D shape analysis using deep learning

brainreg-segment

Last released

Manual segmentation of 3D brain structures in a common anatomical space

morphapi

Last released

A lightweight python package to download neuronal morphologies

brainrender

Last released

Visualisation and exploration of brain atlases and other anatomical data

cellfinder-core

Last released

Automated 3D cell detection in large microscopy images

bg-atlasapi

Last released

A lightweight python module to interact with atlases for systems neuroscience

brainglobe-napari-io

Last released

Read and write files from the BrainGlobe neuroanatomy suite

cellfinder-napari

Last released

Efficient cell detection in large images

python-packaging-at

Last released

A simple Python package

build-test-at

Last released

A simple Python package

slurmio

Last released

Python tools to interface with slurm

slidebook-python

Last released

Open slidebook .sldy files in Python

synchro

Last released

Customisable file transfers using rsync

cellfinder

Last released

Automated 3D cell detection and registration of whole-brain images

fancylog

Last released

Fancier logging in Python

cordmap

Last released

imlib

Last released

General data processing functions

napari-brainreg-standard

Last released

Visualise brainreg registration output in standard space

brainio

Last released

Loading and saving of brain imaging data.

bgviewer

Last released

Visualisation and exploration of brain atlases

amap

Last released

Automated mouse atlas propagation

brainatlas-api

Last released

A lightweight python module to interact with atlases for systems neuroscience

spikey

Last released

Electrophysiology analysis

brainglobe

Last released

TBC

slicereg

Last released

Registration of 2D sections to a 3D volume

movement

Last released

Movement analysis

brainrender-test

Last released

Python scripts to use Allen Brain Map data for analysis and rendering

surfcut

Last released

Cutting confocal stacks at various depths relative to surface signal

cellfinder-analyst

Last released

Group level analysis of cellfinder results.

micrometa

Last released

Reading of microscopy metadata

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