36 projects
photon-mosaic
Automating calcium imaging analysis
beekeeping
Manage video metadata for animal behaviour experiments
NeuralPlayground
The standardised environment for the hippocampus and entorhinal cortex models
poseinterface
Run pose estimation across frameworks
openbioglobe
OpenBioGlobe
imio
Loading and saving of image data.
bg-atlasapi
A lightweight python module to interact with atlases for systems neuroscience
brainreg-napari
Multi-atlas whole-brain microscopy registration
cellfinder-napari
Efficient cell detection in large images
cellfinder-core
Automated 3D cell detection in large microscopy images
brainmapper
Whole brain cell detection and atlas registration
brainreg-segment
Manual segmentation of 3D brain structures in a common anatomical space
bgheatmap
Brain regions heatmaps in brainrender
cellshape-cluster
3D shape analysis using deep learning
cellshape-cloud
3D cell shape analysis using geometric deep learning on point clouds
cellfinder-visualize
Cellfinder output visualization
python-packaging-at
Example of how to package Python projects
cellshape-voxel
3D shape analysis using deep learning
bg-space
Anatomical space conventions made easy
build-test-at
A simple Python package
slidebook-python
Open slidebook .sldy files in Python
synchro
Customisable file transfers using rsync
cordmap
imlib
General data processing functions
napari-brainreg-standard
Visualise brainreg registration output in standard space
brainio
Loading and saving of brain imaging data.
bgviewer
Visualisation and exploration of brain atlases
amap
Automated mouse atlas propagation
bgspace
Anatomical space conventions made easy
brainatlas-api
A lightweight python module to interact with atlases for systems neuroscience
spikey
Electrophysiology analysis
slicereg
Registration of 2D sections to a 3D volume
brainrender-test
Python scripts to use Allen Brain Map data for analysis and rendering
surfcut
Cutting confocal stacks at various depths relative to surface signal
cellfinder-analyst
Group level analysis of cellfinder results.
micrometa
Reading of microscopy metadata
