Skip to main content
Avatar for Adam Tyson from gravatar.com

Adam Tyson

Username    adamltyson
Date joined   Joined

31 projects

brainrender

Last released on

Visualisation and exploration of brain atlases and other anatomical data

cellfinder-napari

Last released on

Efficient cell detection in large images

cellfinder-core

Last released on

Automated 3D cell detection in large microscopy images

napari-cellfinder

Last released on

Visualise cellfinder results with napari

cellfinder

Last released on

Automated 3D cell detection and registration of whole-brain images

imlib

Last released on

General data processing functions

imio

Last released on

Loading and saving of image data.

brainreg-segment

Last released on

Manual segmentation of 3D brain structures in a common anatomical space

napari-brainreg

Last released on

Visualise brainreg registration output

brainreg

Last released on

Automated 3D brain registration

morphapi

Last released on

A lightweight python package to download neuronal morphologies

fancylog

Last released on

Fancier logging in Python

bg-atlasapi

Last released on

A lightweight python module to interact with atlases for systems neuroscience

napari-brainreg-standard

Last released on

Visualise brainreg registration output in standard space

bg-brainrender-gui

Last released on

Visualisation and exploration of brain atlases and other anatomical data

neuro

Last released on

Visualisation and analysis of brain imaging data

brainio

Last released on

Loading and saving of brain imaging data.

slurmio

Last released on

Python tools to interface with slurm

bgviewer

Last released on

Visualisation and exploration of brain atlases

amap

Last released on

Automated mouse atlas propagation

brainatlas-api

Last released on

A lightweight python module to interact with atlases for systems neuroscience

spikey

Last released on

Electrophysiology analysis

brainglobe

Last released on

TBC

slicereg

Last released on

Registration of 2D sections to a 3D volume

movement

Last released on

Movement analysis

mice

Last released on

brainrender-test

Last released on

Python scripts to use Allen Brain Map data for analysis and rendering

surfcut

Last released on

Cutting confocal stacks at various depths relative to surface signal

wombat

Last released on

cellfinder-analyst

Last released on

Group level analysis of cellfinder results.

micrometa

Last released on

Reading of microscopy metadata

Supported by

Pingdom Pingdom Monitoring Google Google Object Storage and Download Analytics Sentry Sentry Error logging AWS AWS Cloud computing DataDog DataDog Monitoring Fastly Fastly CDN DigiCert DigiCert EV certificate StatusPage StatusPage Status page