frisk: Detection of sequence composition anomalies using multiple order kmers.
Scan genomes for internally repeated sequences, elements which are repetitive in another species, or high-identity HGT candidate regions between species.
Extract terminal repeats from retrotransposons (LTRs) or DNA transposons (TIRs). Compose synthetic MITES from complete DNA transposons.
Find alignment signatures characteristic of transposon insertion sites.
Filter short or low quality Oxford Nanopore reads which have been basecalled with Albacore.