Rapid discovery of reciprocal best blast pairs from BLAST output files.
Find alignment signatures characteristic of transposon insertion sites.
Scan genomes for internally repeated sequences, elements which are repetitive in another species, or high-identity HGT candidate regions between species.
Filter short or low quality Oxford Nanopore reads which have been basecalled with Albacore.
Extract terminal repeats from retrotransposons (LTRs) or DNA transposons (TIRs). Compose synthetic MITES from complete DNA transposons.
frisk: Detection of sequence composition anomalies using multiple order kmers.