9 projects
blastbesties
Rapid discovery of reciprocal best blast pairs from BLAST output files.
teloclip
A tool for the recovery of unassembled telomeres from soft-clipped read alignments.
derip2
Predict ancestral sequence of fungal repeat elements by correcting for RIP-like mutations in multi-sequence DNA alignments.
tirmite
Map TIR-pHMM models to genomic sequences for annotation of MITES and complete DNA-Transposons.
tinscan
Find alignment signatures characteristic of transposon insertion sites.
mimeo
Scan genomes for internally repeated sequences, elements which are repetitive in another species, or high-identity HGT candidate regions between species.
yanagiba
Filter short or low quality Oxford Nanopore reads which have been basecalled with Albacore.
TE-splitter
Extract terminal repeats from retrotransposons (LTRs) or DNA transposons (TIRs). Compose synthetic MITES from complete DNA transposons.
frisk
frisk: Detection of sequence composition anomalies using multiple order kmers.