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  adamtaranto

  Joined on Oct 27, 2015

7 projects

blastbesties

Last released on Oct 23, 2017

Rapid discovery of reciprocal best blast pairs from BLAST output files.

tirmite

Last released on Oct 11, 2017

tinscan

Last released on Oct 11, 2017

Find alignment signatures characteristic of transposon insertion sites.

mimeo

Last released on Oct 11, 2017

Scan genomes for internally repeated sequences, elements which are repetitive in another species, or high-identity HGT candidate regions between species.

yanagiba

Last released on Oct 11, 2017

Filter short or low quality Oxford Nanopore reads which have been basecalled with Albacore.

TE-splitter

Last released on Sep 4, 2017

Extract terminal repeats from retrotransposons (LTRs) or DNA transposons (TIRs). Compose synthetic MITES from complete DNA transposons.

frisk

Last released on Mar 28, 2016

frisk: Detection of sequence composition anomalies using multiple order kmers.

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