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Allen Institute for Cell Sciences

Username    aicspypi
Date joined   Joined

26 projects

serotiny

Last released

A framework of tools to structure, configure and drive deep learning projects

nbvv

Last released

Interactive volumetric voxel viewing

aicsimageio

Last released

Image Reading, Metadata Conversion, and Image Writing for Microscopy Images in Pure Python

simulariumio

Last released

Simularium Conversion helps convert simulation outputs to the format consumed by the Simularium viewer.

agave-pyclient

Last released

A Python client for the Agave 3d volume renderer

napari-aicsimageio

Last released

AICSImageIO for napari. Multiple file format reading directly into napari using pure Python.

aicspylibczi

Last released

A python module and a python extension for Zeiss (CZI/ZISRAW) microscopy files.

napari-allencell-segmenter

Last released

A plugin that enables 3D image segmentation provided by Allen Institute for Cell Science

aicscytoparam

Last released

Cytoplasm parameterization using spherical harmonics

segmenter-model-zoo

Last released

scripts and API for running Deep Learning models from segmenter

aicssegmentation

Last released

Part 1 of Allen Cell and Structure Segmenter

aicsimageprocessing

Last released

A generalized scientific image processing module from the Allen Institute for Cell Science.

quilt3distribute

Last released

A small wrapper around quilt3 to make distributing manifest style datasets even easier.

microscope-automation

Last released

Automation software for the AICS Microscopes.

aicsshparam

Last released

Spherical harmonics parametrization for 3D starlike shapes

actk

Last released

Automated Cell Toolkit

aics-tf-registration

Last released

Rigid registration algorithm for generating training/testing data for transfer function model

datastep

Last released

A base class and utilities for creating steps in DAGs that are tied to large amounts of data.

aicsmlsegment

Last released

Scripts for ML structure segmentation.

image-classifier-3d

Last released

Python package for building 3d image classifier using deep neural networks

aics-dask-utils

Last released

Utility functions and documentation related to Dask and AICS

scheduler-tools

Last released

Tools for composing interdependent tasks on a scheduler (i.e. SLURM)

aicsdaemon

Last released

Python Class defining a daemon process. An implemented class that inherts from this should be runnable as a daemon.

oldaicsimageio

Last released

A generalized scientific image processing module from the Allen Institute for Cell Science.

aicsfeature

Last released

Scripts for image features calculation.

qcb-plotting-tools

Last released

Plotting and Analysis tools for QCB

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