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Allen Institute for Cell Sciences

Username    aicspypi
Date joined   Joined

22 projects

aicspylibczi

Last released

A python module and a python extension for Zeiss (CZI/ZISRAW) microscopy files.

aicsimageio

Last released

Image Reading, Metadata Conversion, and Image Writing for Microscopy Images in Pure Python

microscope-automation

Last released

Automation software for the AICS Microscopes.

aicsshparam

Last released

Spherical harmonics parametrization for 3D starlike shapes

aicssegmentation

Last released

Part 1 of Allen Cell and Structure Segmenter

aicscytoparam

Last released

Cytoplasm parameterization using spherical harmonics

actk

Last released

Automated Cell Toolkit

napari-aicsimageio

Last released

AICSImageIO bindings for napari

aics-tf-registration

Last released

Rigid registration algorithm for generating training/testing data for transfer function model

segmenter-model-zoo

Last released

scripts and API for running Deep Learning models from segmenter

datastep

Last released

A base class and utilities for creating steps in DAGs that are tied to large amounts of data.

aicsmlsegment

Last released

Scripts for ML structure segmentation.

simulariumio

Last released

Simularium Conversion helps convert simulation outputs to the format consumed by the Simularium viewer.

image-classifier-3d

Last released

Python package for building 3d image classifier using deep neural networks

aicsimageprocessing

Last released

A generalized scientific image processing module from the Allen Institute for Cell Science.

aics-dask-utils

Last released

Utility functions and documentation related to Dask and AICS

scheduler-tools

Last released

Tools for composing interdependent tasks on a scheduler (i.e. SLURM)

aicsdaemon

Last released

Python Class defining a daemon process. An implemented class that inherts from this should be runnable as a daemon.

quilt3distribute

Last released

A small wrapper around quilt3 to make distributing manifest style datasets even easier.

oldaicsimageio

Last released

A generalized scientific image processing module from the Allen Institute for Cell Science.

aicsfeature

Last released

Scripts for image features calculation.

qcb-plotting-tools

Last released

Plotting and Analysis tools for QCB

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