8 projects
NanoCount
NanoCount estimates transcripts abundance from Oxford Nanopore *direct-RNA sequencing* datasets, using an expectation-maximization approach like RSEM, Kallisto, salmon, etc to handle the uncertainty of multi-mapping reads
pycltools
pycltools is a package written in python3 containing a collection of generic functions and classes for file parsing, manipulation...
pycoMeth
Differential methylation calling suite for Nanopore methylation calls PycoMeth
pyBioTools
pyBioTools is a collection of python tools to manipulate biological sequences
NanopolishComp
NanopolishComp is a Python3 package for downstream analyses of Nanopolish output files
pycoQC
PycoQC computes metrics and generates interactive QC plots for Oxford Nanopore technologies sequencing data
versipy
Versatile version and medatada managment across the python packaging ecosystem with git integration
blastpy3
Lightweight High level Python 3 API for NCBI BLAST
