17 projects
brainglobe-stitch
A tool to stich large tiled datasets generated by the mesoSPIM.
cellfinder
Automated 3D cell detection in large microscopy images
brainglobe-atlasapi
A lightweight python module to interact with and generate atlases for systems neuroscience.
brainrender
Visualisation and exploration of brain atlases and other anatomical data
brainglobe-segmentation
Segmentation of anatomical structures in a common coordinate space
brainglobe-heatmap
Rendering anatomical heatmaps with brainrender and matplotlib
brainglobe-utils
Shared general purpose tools for the BrainGlobe project
brainglobe
Python-based tools for computational neuroanatomy.
brainrender-napari
A napari plugin to render BrainGlobe atlases and associated data as layers.
brainglobe-workflows
A collection of end-to-end data analysis workflows executed using BrainGlobe tools.
brainreg
Automated multi-atlas whole-brain microscopy registration
brainglobe-space
Anatomical space conventions made easy
brainglobe-napari-io
Read and write files from the BrainGlobe computational neuroanatomy suite into napari
bg-atlasapi
A lightweight python module to interact with atlases for systems neuroscience
brainreg-segment
Manual segmentation of 3D brain structures in a common anatomical space
bg-space
Anatomical space conventions made easy
bgspace
Anatomical space conventions made easy
