16 projects
fusor
Provide computable object representation and validation for gene fusions
thera-py
VICC normalization routine for therapies
metakb
A search interface for cancer variant interpretations assembled by aggregating and harmonizing across multiple cancer variant interpretation knowledgebases.
variation-normalizer
VICC normalization routine for variations
uta-tools
Service for querying the biocommons.uta database
gene-normalizer
VICC normalization routine for genes
ga4gh.vrs
"GA4GH Variation Representation Specification (VRS) reference implementation (https://github.com/ga4gh/vrs-python/)"
ga4gh.vrsatile.pydantic
"Translation of the GA4GH VRS and VRSATILE Schemas to a Pydantic data model"
evidence-normalizer
VICC normalization routine for evidence
disease-normalizer
VICC normalization routine for diseases
ga4gh.gks.metaschema
GA4GH Genomic Knowledge Standards meta-schema tools
variant-normalizer
VICC normalization routine for variants
civicpy
CIViC variant knowledgebase analysis toolkit.
civic2clinvar
extraction of CIViC variants into the clinvar submission format
deepsvr
Automated Somatic Variant Refinement by Deep Learning
convert-zero-one-based
Convert between zero and one based coordinate systems and vice versa