16 projects
metakb
A search interface for cancer variant interpretations assembled by aggregating and harmonizing across multiple cancer variant interpretation knowledgebases.
disease-normalizer
VICC normalization routine for diseases
variation-normalizer
VICC normalization routine for variations
gene-normalizer
VICC normalization routine for genes
ga4gh.vrs
"GA4GH Variation Representation Specification (VRS) reference implementation (https://github.com/ga4gh/vrs-python/)"
thera-py
VICC normalization routine for therapies
ga4gh.vrsatile.pydantic
"Translation of the GA4GH VRS and VRSATILE Schemas to a Pydantic data model"
civicpy
CIViC variant knowledgebase analysis toolkit.
fusor
Provide computable object representation and validation for gene fusions
uta-tools
Service for querying the biocommons.uta database
ga4gh.gks.metaschema
GA4GH Genomic Knowledge Standards meta-schema tools
evidence-normalizer
VICC normalization routine for evidence
variant-normalizer
VICC normalization routine for variants
civic2clinvar
extraction of CIViC variants into the clinvar submission format
deepsvr
Automated Somatic Variant Refinement by Deep Learning
convert-zero-one-based
Convert between zero and one based coordinate systems and vice versa