22 projects
ga4gh.cat-vrs
GA4GH Categorical Variation Representation (Cat-VRS) reference implementation
ga4gh.vrs
GA4GH Variation Representation Specification (VRS) reference implementation
wags-llm
Wagnerds toolkit for structured LLM workflows
cool-seq-tool
Common Operation on Lots of Sequences Tool
fusor
Computable object representation and validation for gene fusions
disease-normalizer
VICC normalization routines for diseases
ga4gh.va-spec
GA4GH Variant Annotation (VA) reference implementation
gene-normalizer
VICC normalization routines for genes
civicpy
CIViC variant knowledgebase analysis toolkit.
anyvar
AnyVar provides Python and REST interfaces to validate, normalize, generate identifiers, and register biological sequence variation according to the GA4GH Variation Representation standards.
variation-normalizer
VICC normalization routine for variations
agct
Another Genome Conversion Tool: Python frontend to Rust chainfile crate
evidence-normalizer
VICC normalization routines for evidence
thera-py
VICC normalization routines for therapeutics
metakb
A search interface for cancer variant interpretations assembled by aggregating and harmonizing across multiple cancer variant interpretation knowledgebases.
ga4gh.gks.metaschema
GA4GH Genomic Knowledge Standards meta-schema tools
civic2clinvar
extraction of CIViC variants into the clinvar submission format
deepsvr
Automated Somatic Variant Refinement by Deep Learning
convert-zero-one-based
Convert between zero and one based coordinate systems and vice versa
