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Alistair Miles

Username    aliman

15 projects

malariagen-data

Last released

A package for accessing and analysing MalariaGEN data.

zarr

Last released

An implementation of chunked, compressed, N-dimensional arrays for Python.

petl

Last released

A Python package for extracting, transforming and loading tables of data.

numcodecs

Last released

A Python package providing buffer compression and transformation codecs for use in data storage and communication applications.

scikit-allel

Last released

A Python package for exploring and analysing genetic variation data.

skallel

Last released

Functions for exploratory analysis of genome variation data.

skallel-stats

Last released

Statistical functions for genome variation data.

skallel-tensor

Last released

Tensor functions for genetic variation data.

pysamstats

Last released

A Python utility for calculating statistics against genome position based on sequence alignments from a SAM, BAM or CRAM file.

vcfnp

Last released

Load numpy arrays from a VCF (variant call file).

anhima

Last released

Exploration and Analysis of genetic variation data.

petlx

Last released

Optional extensions for the petl package.

vcfplt

Last released

Convenient plotting functions for variant call data.

vcfarray

Last released

Please note, development of this package has moved to https://github.com/alimanfoo/vcfnp

csvvalidator

Last released

A simple library for validating data contained in CSV files or similar row-oriented data sources.

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