Skip to main content
Avatar for Alistair Miles from gravatar.com

Alistair Miles

Username    aliman

18 projects

anjl

Last released

A neighbour-joining library for Python.

malariagen_data

Last released

A package for accessing and analysing MalariaGEN data.

zarr

Last released

An implementation of chunked, compressed, N-dimensional arrays for Python

numcodecs

Last released

A Python package providing buffer compression and transformation codecs for use in data storage and communication applications.

scikit-allel

Last released

A Python package for exploring and analysing genetic variation data.

numpydoc_decorator

Last released

None

protopunica

Last released

Protopunica is pomegranate frozen at version 0.14.8.

petl

Last released

A Python package for extracting, transforming and loading tables of data.

skallel

Last released

Functions for exploratory analysis of genome variation data.

skallel-stats

Last released

Statistical functions for genome variation data.

skallel-tensor

Last released

Tensor functions for genetic variation data.

pysamstats

Last released

A Python utility for calculating statistics against genome position based on sequence alignments from a SAM, BAM or CRAM file.

vcfnp

Last released

Load numpy arrays from a VCF (variant call file).

anhima

Last released

Exploration and Analysis of genetic variation data.

petlx

Last released

Optional extensions for the petl package.

vcfplt

Last released

Convenient plotting functions for variant call data.

vcfarray

Last released

Please note, development of this package has moved to https://github.com/alimanfoo/vcfnp

csvvalidator

Last released

A simple library for validating data contained in CSV files or similar row-oriented data sources.

Supported by

AWS AWS Cloud computing and Security Sponsor Datadog Datadog Monitoring Fastly Fastly CDN Google Google Download Analytics Microsoft Microsoft PSF Sponsor Pingdom Pingdom Monitoring Sentry Sentry Error logging StatusPage StatusPage Status page