17 projects
zarr
An implementation of chunked, compressed, N-dimensional arrays for Python
scikit-allel
A Python package for exploring and analysing genetic variation data.
protopunica
Protopunica is pomegranate frozen at version 0.14.8.
malariagen_data
A package for accessing and analysing MalariaGEN data.
petl
A Python package for extracting, transforming and loading tables of data.
numpydoc_decorator
numcodecs
A Python package providing buffer compression and transformation codecs for use in data storage and communication applications.
skallel
Functions for exploratory analysis of genome variation data.
skallel-stats
Statistical functions for genome variation data.
skallel-tensor
Tensor functions for genetic variation data.
pysamstats
A Python utility for calculating statistics against genome position based on sequence alignments from a SAM, BAM or CRAM file.
vcfnp
Load numpy arrays from a VCF (variant call file).
anhima
Exploration and Analysis of genetic variation data.
petlx
Optional extensions for the petl package.
vcfplt
Convenient plotting functions for variant call data.
vcfarray
Please note, development of this package has moved to https://github.com/alimanfoo/vcfnp
csvvalidator
A simple library for validating data contained in CSV files or similar row-oriented data sources.
