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Username    aliman

14 projects

zarr

Last released on

An implementation of chunked, compressed, N-dimensional arrays for Python.

petl

Last released on

A Python package for extracting, transforming and loading tables of data.

numcodecs

Last released on

A Python package providing buffer compression and transformation codecs for use in data storage and communication applications.

scikit-allel

Last released on

A Python package for exploring and analysing genetic variation data.

skallel

Last released on

Functions for exploratory analysis of genome variation data.

skallel-stats

Last released on

Statistical functions for genome variation data.

skallel-tensor

Last released on

Tensor functions for genetic variation data.

pysamstats

Last released on

A Python utility for calculating statistics against genome position based on sequence alignments from a SAM, BAM or CRAM file.

vcfnp

Last released on

Load numpy arrays from a VCF (variant call file).

anhima

Last released on

Exploration and Analysis of genetic variation data.

petlx

Last released on

Optional extensions for the petl package.

vcfplt

Last released on

Convenient plotting functions for variant call data.

vcfarray

Last released on

Please note, development of this package has moved to https://github.com/alimanfoo/vcfnp

csvvalidator

Last released on

A simple library for validating data contained in CSV files or similar row-oriented data sources.

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