Alister Burt

torch-fourier-slice

Last released Nov 19, 2024

Fourier slice extraction/insertion in PyTorch.

starfile

Last released Jun 18, 2020

Read and write STAR files as pandas DataFrames

torch-image-lerp

Last released Nov 7, 2024

Linear interpolation and gridding for 2D and 3D images in PyTorch

napari-threedee

Last released Oct 8, 2024

A suite of useful tools based on 3D interactivity in napari

morphosamplers

Last released Oct 8, 2024

A library for sampling image data along morphological objects such as splines and surfaces.

mdocfile

Last released Aug 16, 2024

SerialEM mdoc files as pandas dataframes.

torch-fourier-rescale

Last released Jul 11, 2024

Rescale 2D and 3D images by Fourier padding/cropping in PyTorch

torch-fourier-shell-correlation

Last released Jun 29, 2024

Compute the Fourier shell correlation in PyTorch

torch-subpixel-crop

Last released Jun 16, 2024

Extract 2D/3D subimages with subpixel precision in PyTorch

imodmodel

Last released Jun 13, 2024

IMOD model files as pandas DataFrames in Python.

torch-grid-utils

Last released May 26, 2024

Grid utilities for 2D/3D image manipulations in PyTorch

torch-fourier-shift

Last released May 25, 2024

Shift 2D/3D images by phase shifting Fourier transforms in PyTorch

napari-tomoslice

Last released May 23, 2024

Tomogram visualisation and annotation in napari.

yet-another-imod-wrapper

Last released Jan 11, 2024

A simple API for automated tilt-series alignment using IMOD

napari-mrcfile-reader

Last released Jun 8, 2023

Read MRC2014 files in napari using mrcfile.

fidder

Last released May 16, 2023

U-Net for 2D fiducial segmentation in cryo-EM

torch-cubic-spline-grids

Last released Mar 27, 2023

Cubic spline interpolation on multidimensional grids in PyTorch

torch-cubic-b-spline-grid

Last released Mar 22, 2023

Cubic B-spline interpolation on multidimensional grids in PyTorch

mdocspoofer

Last released Nov 9, 2022

spoof SerialEM mdoc files from images collected in Tomography v5 from ThermoFisher

segmentation-nets-in-pytorch

Last released Apr 5, 2022

A collection of neural networks for 2D and 3D image segmentation in PyTorch

tiltstack

Last released Feb 7, 2022

stack tilt images into tilt-series, keeping track of metadata

napari-subboxer

Last released Nov 22, 2021

A napari plugin for interacting with electron cryotomograms

mrchead

Last released Oct 19, 2021

CLI tool for viewing mrc file headers

emanjson2imodxf

Last released Sep 14, 2021

Convert tilt-series alignments from EMAN2 to IMOD format.

dynamo2m

Last released May 7, 2021

Interface the cryo-EM packages warp, dynamo and M

pathlibls

Last released Mar 27, 2021

Add convenience methods ls and listdir to Path objects

eulerangles

Last released Mar 3, 2021

Simplify the handling of large sets of Euler angles in Python

dynamotable

Last released Feb 6, 2021

Read and write table files from the Dynamo software package for subtomogram averaging as pandas dataframes