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Martin Larralde

Username    althonos
Date joined   Joined

42 projects

fastobo

Last released

Faultless AST for Open Biomedical Ontologies in Python.

pyhmmer

Last released

Cython bindings and Python interface to HMMER3.

sphinxcontrib-svgbob

Last released

A Sphinx extension to convert ASCII diagrams to SVGs with Svgbob.

iocursor

Last released

A zero-copy file-like wrapper for byte buffers, inspired by Rust's std::io::Cursor.

fs.smbfs

Last released

Pyfilesystem2 over SMB using pysmb

pyrodigal

Last released

Cython bindings and Python interface to Prodigal, an ORF finder for genomes and metagenomes.

pyopal

Last released

Cython bindings and Python interface to Opal, a SIMD-accelerated pairwise aligner.

pytrimal

Last released

Cython bindings and Python interface to trimAl, a tool for automated alignment trimming.

btyper3

Last released

In silico taxonomic classification of Bacillus cereus group isolates using assembled genomes

mzml2isa

Last released

mzML file parser and converter to ISA-Tab

pronto

Last released

Python frontend to ontologies.

peptides

Last released

Physicochemical properties, indices and descriptors for amino-acid sequences.

pyfastani

Last released

Cython bindings and Python interface to FastANI, a method for fast whole-genome similarity estimation.

gb-io

Last released

A Python interface to gb-io, a fast GenBank parser written in Rust.

gecco-tool

Last released

Gene cluster prediction with Conditional random fields.

pyfamsa

Last released

Cython bindings and Python interface to FAMSA, an algorithm for ultra-scale multiple sequence alignments.

pymemesuite

Last released

Cython bindings and Python interface to the MEME suite.

rich-msa

Last released

A Rich renderable for viewing Multiple Sequence Alignments in the terminal.

fs

Last released

Python's filesystem abstraction layer

fs.archive

Last released

Enhanced archive filesystems for Pyfilesystem2

fs.sshfs

Last released

Pyfilesystem2 over SSH using paramiko

moclo

Last released

A Python implementation of the MoClo system logic.

orthoani

Last released

An implementation of the OrthoANI algorithm for nucleotide identity measurement.

ffpb

Last released

A progress bar for ffmpeg. Yay !

instalooter

Last released

Another API-less Instagram pictures and videos downloader

nanoset

Last released

A memory-optimized wrapper for Python sets likely to be empty.

pyhcrf

Last released

A hidden (state) conditional random field (HCRF) implementation written in Python and Cython.

property-cached

Last released

A decorator for caching properties in classes (forked from cached-property).

jinja2-fsloader

Last released

A Jinja2 template loader using PyFilesystem2

moclo-ecoflex

Last released

EcoFlex implementation for the base moclo library.

moclo-ytk

Last released

Yeast ToolKit implementation for the base moclo library.

moclo-cidar

Last released

CIDAR implementation for the base moclo library.

bindings.rust

Last released

A namespace for Python bindings to Rust libraries

bindings.cpp

Last released

A namespace for Python bindings to C++ libraries

bindings.c

Last released

A namespace for Python bindings to C libraries

bindings

Last released

A namespace for Python binding modules

fs.proxy

Last released

Miscellaneous proxy filesystems for Pyfilesystem2

dockerasmus

Last released

An easy to use docking library.

imzml2isa-qt

Last released

A PyQt interface for mzml2isa parser.

mzml2isa-qt

Last released

A PyQt interface for mzml2isa parser.

nmrml2isa

Last released

nmrml2isa - nmrML to ISA-Tab parsing tool

nmrml2isa-qt

Last released

A PyQt interface for nmrml2isa parser.

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