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Martin Larralde

Username    althonos
Date joined   Joined

48 projects

nafcodec

Last released

PyO3 bindings and Python interface to nafcodec, an encoder/decoder for Nucleotide Archive Format (NAF) files.

gb-io

Last released

A Python interface to gb-io, a fast GenBank parser and serializer written in Rust.

pyhmmer

Last released

Cython bindings and Python interface to HMMER3.

pyswrd

Last released

Cython bindings and Python interface to SWORD (Smith Waterman On Reduced Database), a heuristic method for fast database search.

pyopal

Last released

Cython bindings and Python interface to Opal, a SIMD-accelerated pairwise aligner.

gecco-tool

Last released

Gene cluster prediction with Conditional random fields.

pronto

Last released

Python frontend to ontologies.

pyfastani

Last released

Cython bindings and Python interface to FastANI, a method for fast whole-genome similarity estimation.

torch-treecrf

Last released

A PyTorch implementation of Tree-structured Conditional Random Fields.

pyfamsa

Last released

Cython bindings and Python interface to FAMSA, an algorithm for ultra-scale multiple sequence alignments.

pyrodigal

Last released

Cython bindings and Python interface to Prodigal, an ORF finder for genomes and metagenomes.

lightmotif

Last released

PyO3 bindings and Python interface to lightmotif, a library for platform-accelerated biological motif scanning using position weight matrices.

fastobo

Last released

Faultless AST for Open Biomedical Ontologies in Python.

pyrodigal-gv

Last released

A Pyrodigal extension to predict genes in giant viruses and viruses with alternative genetic code.

nmrml2isa

Last released

nmrml2isa - nmrML to ISA-Tab parsing tool

fs.sshfs

Last released

Pyfilesystem2 over SSH using paramiko

pytrimal

Last released

Cython bindings and Python interface to trimAl, a tool for automated alignment trimming.

btyper3

Last released

In silico taxonomic classification of Bacillus cereus group isolates using assembled genomes

peptides

Last released

Physicochemical properties, indices and descriptors for amino-acid sequences.

pyskani

Last released

PyO3 bindings and Python interface to skani, a method for fast fast genomic identity calculation using sparse chaining.

pymemesuite

Last released

Cython bindings and Python interface to the MEME suite.

fs.smbfs

Last released

Pyfilesystem2 over SMB using pysmb

sphinxcontrib-svgbob

Last released

A Sphinx extension to convert ASCII diagrams to SVGs with Svgbob.

iocursor

Last released

A zero-copy file-like wrapper for byte buffers, inspired by Rust's std::io::Cursor.

mzml2isa

Last released

mzML file parser and converter to ISA-Tab

rich-msa

Last released

A Rich renderable for viewing Multiple Sequence Alignments in the terminal.

fs

Last released

Python's filesystem abstraction layer

fs.archive

Last released

Enhanced archive filesystems for Pyfilesystem2

moclo

Last released

A Python implementation of the MoClo system logic.

orthoani

Last released

An implementation of the OrthoANI algorithm for nucleotide identity measurement.

ffpb

Last released

A progress bar for ffmpeg. Yay !

instalooter

Last released

Another API-less Instagram pictures and videos downloader

nanoset

Last released

A memory-optimized wrapper for Python sets likely to be empty.

pyhcrf

Last released

A hidden (state) conditional random field (HCRF) implementation written in Python and Cython.

property-cached

Last released

A decorator for caching properties in classes (forked from cached-property).

jinja2-fsloader

Last released

A Jinja2 template loader using PyFilesystem2

moclo-ecoflex

Last released

EcoFlex implementation for the base moclo library.

moclo-ytk

Last released

Yeast ToolKit implementation for the base moclo library.

moclo-cidar

Last released

CIDAR implementation for the base moclo library.

bindings.rust

Last released

A namespace for Python bindings to Rust libraries

bindings.cpp

Last released

A namespace for Python bindings to C++ libraries

bindings.c

Last released

A namespace for Python bindings to C libraries

bindings

Last released

A namespace for Python binding modules

fs.proxy

Last released

Miscellaneous proxy filesystems for Pyfilesystem2

dockerasmus

Last released

An easy to use docking library.

imzml2isa-qt

Last released

A PyQt interface for mzml2isa parser.

mzml2isa-qt

Last released

A PyQt interface for mzml2isa parser.

nmrml2isa-qt

Last released

A PyQt interface for nmrml2isa parser.

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