5 projects
ark-analysis
Toolbox for analysis on segmented images from MIBI.
alpineer
Toolbox for Multiplexed Imaging. Contains scripts and little tools which are used throughout ark-analysis, mibi-bin-tools, and toffy.
Toffy
Scripts for interacting with and generating data from the commercial MIBIScope.
pyFlowSOM
A Python implementation of the SOM training functionality of FlowSOM
mibi-bin-tools
Source for extracting .bin files from the commercial MIBI.
