11 projects
chrombpnet
chrombpnet predicts chromatin accessibility from sequence
ACTIONet
ACTIONet single-cell analysis framework
kundajelab-shap
Kundaje lab edits to Scott Lundberg's unified approach to explain the output of any machine learning model.
dragonn
Deep RegulAtory GenOmic Neural Networks (DragoNN)
kerasAC
keras Accessibility Models (kerasAC)
seqdataloader
Generate genome-wide classification and regression labels for DNA accessibility data.
deeplift
DeepLIFT (Deep Learning Important FeaTures)
keras-genomics
Keras Deep Learning for Genomics layers
SAMstats
SAM file alignment statistics at the read level
locusselect
Compute deep learning embeddings for narrowPeak files; compute pairwise distance between embeddings and cluster with tSNE
simdna-dragonn
Simulations of DNA for the Dragonn Package
