Skip to main content
Avatar for aaylward from gravatar.com

aaylward

Username    anthony-aylward
Date joined   Joined

39 projects

chipseqpeaks

Last released

Easy management of ChIP-seq peak calling

gtracks

Last released

Plot genome track data

phased-methylation

Last released

Pipeline for phased methylation calling on raw nanopore data

specivar

Last released

Filter VCF to variants that are specific to a sample group

pysmoove-summary

Last released

Summarize pysmoove SV calling VCF results in a BED-like format

tssenrich

Last released

Calculate TSS enrichment for ATAC-seq data

pysmoove

Last released

Execute the population-level SV calling workflow for smoove

tempfifo

Last released

This module creates temporary named pipes

pydbsnp

Last released

Interface with dbSNP VCF data

seqalign

Last released

Manage sequence alignments

luciferase

Last released

Helper functions for luciferase data

acdumo

Last released

Accelerated dual momentum

funcgenom

Last released

Classes and functions for functional genomics analysis

pileups

Last released

Manipulate files of the pileup format from SAMtools

bbprop

Last released

Hypothesis test for difference of beta-binomial proportions

bbpmf

Last released

Probability mass function for a beta-binomial distribution

wasp-map

Last released

Utilites for the mapping pipeline from WASP

pyQuASAR-genotype

Last released

Command line tool for genotyping with QuASAR

splitbam

Last released

Split a BAM file into two subsamples

pyfgwas

Last released

Wrapper for fGWAS

finrich

Last released

Calculate enrichment of genomic regions with fine-mapping signals

picardtools

Last released

python3 interface with Picard Tools from Broad institute

Flask-FTSCursor

Last released

An extension to facilitate using FTSCursor with flask

dismotif

Last released

disrupted motifs

betabernsum

Last released

Sums of beta-bernoulli random variables

coloc

Last released

the COLOC method by Giambartolomei et al.

estimateratio

Last released

Estimate ratios of random variables

mutil

Last released

Utilities for managing memory on a CentOS 7 system

fancyprint

Last released

Fancy version of `print()` that can add color and style

ldsc2

Last released

Simplify stratified LD score regression

pyQuASAR

Last released

Wrap quasar for pipelines

pyhg19

Last released

Utilities for working with human genome build hg19

py1kgp

Last released

Utilities for working with 1000 Genomes data

sumstats

Last released

utilities for working with GWAS summary statistics

overdisp

Last released

Estimation of overdispersion parameters

allelicimbalance

Last released

Utilities for studying allelic imbalance

jsontab

Last released

Agnostically load JSON or tabular data

accelasc

Last released

implementation of accel_asc algorithm for integer partitions

ftscursor

Last released

A sqlite3 cursor with extra methods to support FTS3/4/5

Supported by

AWS AWS Cloud computing Datadog Datadog Monitoring Facebook / Instagram Facebook / Instagram PSF Sponsor Fastly Fastly CDN Google Google Object Storage and Download Analytics Huawei Huawei PSF Sponsor Microsoft Microsoft PSF Sponsor NVIDIA NVIDIA PSF Sponsor Pingdom Pingdom Monitoring Salesforce Salesforce PSF Sponsor Sentry Sentry Error logging StatusPage StatusPage Status page