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aaylward

Username    anthony-aylward
Date joined   Joined

43 projects

pankmer

Last released

Generate a PanGenome given a set of genomes

kossou-hillshade-cli

Last released

Plot hillshade over Lake Kossou using satellite elevation data

kossou-hillshade-base

Last released

Plot hillshade over Lake Kossou using satellite elevation data

pygna2

Last released

Geneset Network Analysis

loreme

Last released

Extract Methylation calls from ONT or PB long read data

gtracks

Last released

Plot genome track data

pysmoove-summary

Last released

Summarize pysmoove SV calling VCF results in a BED-like format

mutil

Last released

Utility for managing memory with cgroup

phased-methylation

Last released

Pipeline for phased methylation calling on raw nanopore data

gff2bed

Last released

Convert GFF3-formatted data to BED format

seqalign

Last released

Manage sequence alignments

pyQuASAR-genotype

Last released

Command line tool for genotyping with QuASAR

pyQuASAR

Last released

Wrap quasar for pipelines

pyhg19

Last released

Utilities for working with human genome build hg19

pydbsnp

Last released

Interface with dbSNP VCF data

py1kgp

Last released

Utilities for working with 1000 Genomes data

pileups

Last released

Manipulate files of the pileup format from SAMtools

picardtools

Last released

python3 interface with Picard Tools from Broad institute

overdisp

Last released

Estimation of overdispersion parameters

luciferase

Last released

Helper functions for luciferase data

funcgenom

Last released

Classes and functions for functional genomics analysis

Flask-FTSCursor

Last released

An extension to facilitate using FTSCursor with flask

ftscursor

Last released

A sqlite3 cursor with extra methods to support FTS3/4/5

finrich

Last released

Calculate enrichment of genomic regions with fine-mapping signals

estimateratio

Last released

Estimate ratios of random variables

dismotif

Last released

disrupted motifs

coloc

Last released

the COLOC method by Giambartolomei et al.

chipseqpeaks

Last released

Easy management of ChIP-seq peak calling

betabernsum

Last released

Sums of beta-bernoulli random variables

bbprop

Last released

Hypothesis test for difference of beta-binomial proportions

bbpmf

Last released

Probability mass function for a beta-binomial distribution

allelicimbalance

Last released

Utilities for studying allelic imbalance

tssenrich

Last released

Calculate TSS enrichment for ATAC-seq data

wasp-map

Last released

Utilites for the mapping pipeline from WASP

accelasc

Last released

implementation of accel_asc algorithm for integer partitions

tempfifo

Last released

This module creates temporary named pipes

splitbam

Last released

Split a BAM file into two subsamples

sumstats

Last released

utilities for working with GWAS summary statistics

specivar

Last released

Filter VCF to variants that are specific to a sample group

pysmoove

Last released

Execute the population-level SV calling workflow for smoove

acdumo

Last released

Accelerated dual momentum

ldsc2

Last released

Simplify stratified LD score regression

jsontab

Last released

Agnostically load JSON or tabular data

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