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aaylward

Username    anthony-aylward
Date joined   Joined on

30 projects

finrich

Last released on

Calculate enrichment of genomic regions with fine-mapping signals

gtracks

Last released on

Plot genome track data

picardtools

Last released on

python3 interface with Picard Tools from Broad institute

wasp-map

Last released on

Utilites for the mapping pipeline from WASP

seqalign

Last released on

Manage sequence alignments

pyQuASAR-genotype

Last released on

Command line tool for genotyping with QuASAR

pileups

Last released on

Manipulate files of the pileup format from SAMtools

luciferase

Last released on

Helper functions for luciferase data

chipseqpeaks

Last released on

Easy management of ChIP-seq peak calling

funcgenom

Last released on

Classes and functions for functional genomics analysis

pydbsnp

Last released on

Interface with dbSNP VCF data

Flask-FTSCursor

Last released on

An extension to facilitate using FTSCursor with flask

dismotif

Last released on

disrupted motifs

betabernsum

Last released on

Sums of beta-bernoulli random variables

coloc

Last released on

the COLOC method by Giambartolomei et al.

estimateratio

Last released on

Estimate ratios of random variables

mutil

Last released on

Utilities for managing memory on a CentOS 7 system

fancyprint

Last released on

Fancy version of `print()` that can add color and style

ldsc2

Last released on

Simplify stratified LD score regression

pyQuASAR

Last released on

Wrap quasar for pipelines

pyhg19

Last released on

Utilities for working with human genome build hg19

py1kgp

Last released on

Utilities for working with 1000 Genomes data

tempfifo

Last released on

This module creates temporary named pipes

sumstats

Last released on

utilities for working with GWAS summary statistics

overdisp

Last released on

Estimation of overdispersion parameters

allelicimbalance

Last released on

Utilities for studying allelic imbalance

tssenrich

Last released on

Calculate TSS enrichment for ATAC-seq data

jsontab

Last released on

Agnostically load JSON or tabular data

accelasc

Last released on

implementation of accel_asc algorithm for integer partitions

ftscursor

Last released on

A sqlite3 cursor with extra methods to support FTS3/4/5

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