52 projects
pynwb
Package for working with Neurodata stored in the NWB format.
roiextractors
Python module for extracting optical physiology ROIs and traces for various file types and formats
neuroconv
Convert data from proprietary formats to NWB format.
ndx-pose
NWB extension to store pose estimation data
brokenaxes
Create broken axes
dandi-s3-log-parser
Parse S3 logs to more easily calculate usage metrics per asset.
nwbinspector
Tool to inspect NWB files for best practices compliance.
vame-py
Variational Animal Motion Embedding.
ndx-photometry
extension for fiber photometry data
code-crafter
Edit Python code with ease.
ndx-turner-metadata
The NWB extension for storing Turner lab specific metadata
ndx-pinto-metadata
The NWB extension for storing ViRMEN experimental metadata for the Pinto lab.
nwbwidgets
This is nwbwidgets, widgets for viewing the contents of a NWB-file in Jupyter Notebooks using ipywidgets.
ndx-miniscope
Represent metadata for Miniscope acquisition system.
fparse
parse() is the opposite of format()
ndx-ibl
IBL sessions specific metadata
ahrens-lab-to-nwb
NWB conversion scripts, functions, and classes for an the Ahrens lab.
ndx-hierarchical-behavioral-data
NWB extensions for storing hierarchical behavioral data
murthy-lab-to-nwb
NWB conversion scripts, functions, and classes for the nwb conversion of Murthy lab
ndx-extract
NWB extension for storage of parameters and output of EXTRACT pipeline.
ndx-sound
Represent acoustic stimuli and responses
nwb-conversion-tools
Convert data from proprietary formats to NWB format.
heidelberg-metadata-gui
Web graphical user interface for Metadata handling
jaeger-lab-to-nwb
NWB conversion scripts and tutorials.
nwb-web-gui
Web graphical user interface for NWB conversion and exploring
json-schema-to-dash-forms
JSON schema to Dash forms
ndx-dandi-icephys
DandiIcephysMetadata extension.
movshon-lab-to-nwb
NWB conversion scripts and tutorials.
tank-lab-to-nwb
NWB conversion scripts and tutorials.
ndx-tank-metadata
NWB:N extension for storing metadata for Tank lab
ndx-fret
FRET
ndx-events
NWB extension for storing timestamped event and TTL pulse data
ecogvis
Timeseries visualizer for Electrocorticography (ECoG) signals stored in NWB files.
ndx-survey-data
NWB extension for survey/ behavioral data
ndx-bipolar-scheme
An NWB extension for storing bipolar scheme
ndx-spectrum
data type for holding power or phase spectra for a signal
ndx-labmetadata-abf
LabMetaData extension.
lazy-ops
Lazy slicing and transpose operations for h5py and zarr
ndx-icephys-meta
Implement proposal for hierarchical metadata strucutre for intracellular electrophysiology data
tolias-lab-to-nwb
tool to convert Tolias Lab matlab intracellular electrophysiology data into NWB:N format
ndx-labmetadata-giocomo
LabMetaData.
ndx-point-cloud-table
An extension for storing point clouds in an NWB file
axel-lab-to-nwb
NWB conversion scripts and tutorials.
buffalo-lab-data-to-nwb
A package for converting Buffalo Lab data to the NWB standard
ndx-bipolar-referencing
An NWB:N extension for storing bipolar referencing schema
ndx-simulation-output
Holds structures for recording data from multiple compartments of multiple neurons in a single TimeSeries
ndx-ecog
An NWB extension for storing the cortical surface of subjects in ECoG experiments
ndx-grayscalevolume
3D grayscale image.
ndx-speech
transcriptions and other speech-related data
nwb-docutils
Collection of CLIs, scripts and modules useful to generate the NWB documentation
nwbext-ecog
Convert data to nwb
nwbext-simulation-output
Extension for storing large-scale simulation output in the Neurodata Without Borders: Neurophysiology format
