53 projects
neuroconv
Convert data from proprietary formats to NWB format.
roiextractors
Python module for extracting optical physiology ROIs and traces for various file types and formats
vame-py
Variational Animal Motion Embedding.
pynwb
Package for working with Neurodata stored in the NWB format.
nwbinspector
Tool to inspect NWB files for best practices compliance.
ndx-events
NWB extension for storing timestamped event and TTL pulse data
ndx-vame
NWB extension for VAME
ndx-sound
Represent acoustic stimuli and responses
ndx-pose
NWB extension to store pose estimation data
brokenaxes
Create broken axes
dandi-s3-log-parser
Parse S3 logs to more easily calculate usage metrics per asset.
ndx-photometry
extension for fiber photometry data
code-crafter
Edit Python code with ease.
ndx-turner-metadata
The NWB extension for storing Turner lab specific metadata
ndx-pinto-metadata
The NWB extension for storing ViRMEN experimental metadata for the Pinto lab.
nwbwidgets
This is nwbwidgets, widgets for viewing the contents of a NWB-file in Jupyter Notebooks using ipywidgets.
ndx-miniscope
Represent metadata for Miniscope acquisition system.
fparse
parse() is the opposite of format()
ndx-ibl
IBL sessions specific metadata
ahrens-lab-to-nwb
NWB conversion scripts, functions, and classes for an the Ahrens lab.
ndx-hierarchical-behavioral-data
NWB extensions for storing hierarchical behavioral data
murthy-lab-to-nwb
NWB conversion scripts, functions, and classes for the nwb conversion of Murthy lab
ndx-extract
NWB extension for storage of parameters and output of EXTRACT pipeline.
nwb-conversion-tools
Convert data from proprietary formats to NWB format.
heidelberg-metadata-gui
Web graphical user interface for Metadata handling
jaeger-lab-to-nwb
NWB conversion scripts and tutorials.
nwb-web-gui
Web graphical user interface for NWB conversion and exploring
json-schema-to-dash-forms
JSON schema to Dash forms
ndx-dandi-icephys
DandiIcephysMetadata extension.
movshon-lab-to-nwb
NWB conversion scripts and tutorials.
tank-lab-to-nwb
NWB conversion scripts and tutorials.
ndx-tank-metadata
NWB:N extension for storing metadata for Tank lab
ndx-fret
FRET
ecogvis
Timeseries visualizer for Electrocorticography (ECoG) signals stored in NWB files.
ndx-survey-data
NWB extension for survey/ behavioral data
ndx-bipolar-scheme
An NWB extension for storing bipolar scheme
ndx-spectrum
data type for holding power or phase spectra for a signal
ndx-labmetadata-abf
LabMetaData extension.
lazy-ops
Lazy slicing and transpose operations for h5py and zarr
ndx-icephys-meta
Implement proposal for hierarchical metadata strucutre for intracellular electrophysiology data
tolias-lab-to-nwb
tool to convert Tolias Lab matlab intracellular electrophysiology data into NWB:N format
ndx-labmetadata-giocomo
LabMetaData.
ndx-point-cloud-table
An extension for storing point clouds in an NWB file
axel-lab-to-nwb
NWB conversion scripts and tutorials.
buffalo-lab-data-to-nwb
A package for converting Buffalo Lab data to the NWB standard
ndx-bipolar-referencing
An NWB:N extension for storing bipolar referencing schema
ndx-simulation-output
Holds structures for recording data from multiple compartments of multiple neurons in a single TimeSeries
ndx-ecog
An NWB extension for storing the cortical surface of subjects in ECoG experiments
ndx-grayscalevolume
3D grayscale image.
ndx-speech
transcriptions and other speech-related data
nwb-docutils
Collection of CLIs, scripts and modules useful to generate the NWB documentation
nwbext-ecog
Convert data to nwb
nwbext-simulation-output
Extension for storing large-scale simulation output in the Neurodata Without Borders: Neurophysiology format
