13 projects
thresholdmodel
Simulate a continuous-time threshold model on static networks.
epipack
Fast prototyping of epidemiological models based on reaction equations. Analyze the ODEs analytically or numerically, or run stochastic simulations on networks/well-mixed systems.
binpacking
Heuristic distribution of weighted items to bins (either a fixed number of bins or a fixed number of volume per bin). Data may be in form of list, dictionary, list of tuples or csv-file.
netwulf
Interactively visualize networks with Ulf Aslak's d3-tool from Python.
bfmplot
Snippet collections for plots how I make them.
gtom
computes the general topological overlap matrix of an undirected network
couzinswarm
Simulating fish swarming behavior with the model by Iain Couzin et al.
smallworld
Generate modified small-world networks and compare with theoretical predictions.
cividis
Register `cividis` with matplotlib, a color map optimized for color vision deficiency, as published in Nuñez, et al. (2018), PLoS ONE 13(7): e0199239 .
fisheye
Transform single points or arrays of points using several fisheye functions.
simind
Compute various incidence based or abundance based similarity indices between two numpy arrays.
effective-distance
Generates a radial layout for trees whose nodes are associated with a distance to the root.
radial-distance-layout
Generates a radial layout for trees whose nodes are associated with a distance to the root.
