4 projects
jacquard
Command-line tools to expedite analysis of Variant Call Format (VCF) files.
Connor
Command-line tool to deduplicate reads in bam files based on custom inline barcoding.
Katana
Command-line tool to soft-clip reads based on primer locations.
zither
Command-line tool to pull raw depths and alt freqs from BAM file(s) based on an existing VCF, writing output as new VCF to stdout.
