6 projects
par-segmentation
Cell cortex segmentation and quantification in C. elegans PAR protein images
matplotlib-polyroi
Module for selecting polygonal ROIs on images, spline fitting and ROI expansion
saibr
Python implementation of SAIBR: a tool for performing spectral autofluorescence correction on biological images
discco
Quantification of membrane and cytoplasmic concentrations based on differentiable simulation of cell cortex images
pde-rk
Package for simulating one-dimensional PDE models with and adaptive Runge-Kutta scheme
parameter-space-2d
Tools for performing 2D parameter space analysis for deterministic models
