40 projects
copairs
Find pairs and compute metrics between them
cp_measure
cp-measure implements CellProfiler Measurements. You can integrate them to your workflow or use them from CellProfiler 5 once they are integrated there.
jump-portrait
Tools to fetch and visualize JUMP images
broad-babel
A translator of Broad and JUMP ids to more conventional names.
jump_deps
Convenience package to add dependencies for JUMP exploratory analysis
arrakis
caballo
yaqui
tomatl
popolvuh
nahual
nagual
mictlan
chaneque
alux
xerus
waterdog
uakari
saiga
mynah
makhor
kakapo
gaur
colugo
bubalina
aurochs
saola
smiles
kaljax
Kalman filter implemented in JAX for GPU and CPU usage
aliby
Process and analyse live-cell imaging data
aliby-baby
Birth Annotator for Budding Yeast
aliby-post
Post-processing tools for aliby pipeline.
aliby-agora
A gathering of shared utilities for the Swain Lab image processing pipeline.
aliby-extraction
aliby-parser
Log files parser for aliby pipeline.
