34 projects
git-annex
manage files with git, without checking their contents into git
fmriprep-docker
A wrapper for generating Docker commands using regular fMRIPrep syntax
fmriprep
A robust and easy-to-use pipeline for preprocessing of diverse fMRI data
niworkflows
NeuroImaging Workflows provides processing tools for magnetic resonance images of the brain.
sdcflows
Susceptibility Distortion Correction (SDC) workflows for EPI MR schemes.
dandi
Command line client for interaction with DANDI instances
acres
Access resources on your terms
bidsschematools
Python tools for working with the BIDS schema.
nireports
NiReports - The Visual Report System (VRS) of NiPreps
smriprep-docker
A wrapper for generating Docker commands using regular sMRIPrep syntax
smriprep
Structural MRI Preprocessing Pipelines
pydra
Pydra dataflow engine
pydra-dcm2niix
pydra-dcm2niix contains Pydra task specifications for the Dcm2niix converter
pydra-mrtrix3
pydra-mrtrix3 contains Pydra task specifications for MRtrix3 tools
nipype
Neuroimaging in Python: Pipelines and Interfaces
mriqc
Automated Quality Control and visual reports for Quality Assessment of structural (T1w, T2w) and functional MRI of the brain.
gradunwarp
HCP version of Gradient Unwarping Package for Python/Numpy
nibabel
Access a multitude of neuroimaging data formats
nipy-gradunwarp
HCP version of Gradient Unwarping Package for Python/Numpy
templateflow
TemplateFlow Python Client - TemplateFlow is the Zone of neuroimaging templates.
miniqc
A BIDS app for performing minimal QC beyond validation
nitime
Nitime: timeseries analysis for neuroscience data
eddymotion
Pure python eddy-current and head-motion correction for dMRI, an extension of QSIprep's SHOREline algorithm (Cieslak, 2020) to multiple diffusion models.
pydra-nipype1
Tools for importing nipype 1.x interfaces into Pydra
nipreps-versions
Version schemes for nipreps tools
versioneer
Easy VCS-based management of project version strings
looseversion
Version numbering for anarchists and software realists
quickshear
Quickshear Defacing for Neuroimages
improf
The import profiler
fitlins
Fit Linear Models to BIDS Datasets
niflow-nipype1-workflows
niflow-nipype1-workflows workflow package
niflow-manager
nfm: niflow management tool
niflow-nipype1-examples
niflow-nipype1-examples workflow package
mkdocs-branchcustomization-plugin
Update mkdocs configuration based on the git branch
