23 projects
scout-browser
Clinical DNA variant visualizer and browser.
cg
Clinical Genomics command center
housekeeper
File data orchestrator
cg-hermes
Convert information between pipelines and CG
trailblazer
Keep track of and manage analyses
genmod
Annotate genetic inheritance models in variant files
schug
Keep track of genes, transcripts and exons from different sources
loqusdb
A simple observation count database
stranger
Annotate VCF files with str variants
crunchy
Compress fastq files with spring and check the integrity
patientMatcher
A python and MongoDB-based Matchmaker Exchange server
chanjo-report
Automatically render coverage reports from Chanjo ouput
chanjo
Coverage analysis tool for clinical sequencing
mutacc
The mutation accumulation database
cgmodels
cg-fluffy
NIPT analysis pipeline
mongo-adapter
A python interface to handle connection to a mongod instance
demux
Application for demultiplexing sequence data
varg
Benchmark vcf-files against a truth-set of positive controls
shipping
Cli utility for deploying packages
genotype
genotype provides an automated pipipeline for comparinggenotypes from different assays.
cgstats
Models and access to cgstats
variant_integrity
Tool to check mendelian errors and estimate if father is father
