71 projects
deep-research-client
Wrapper for multiple deep research tools
linkml-term-validator
Validating external terms
biolink-model
The Biolink Model is a high-level data model designed to standardize types and relationships in biological knowledgebases.
linkml-runtime
Runtime environment for LinkML, the Linked open data modeling language
linkml
Linked Open Data Modeling Language
PyShEx
Python ShEx interpreter
ShExJSG
ShExJSG - Astract Syntax Tree Definition for the ShEx 2.0 language
PyJSG
Python JSON Schema Grammar interpreter
PyShexC
PyShExC - Python ShEx compiler
linkml-store
linkml-store
tmux-pilot
A thin, opinionated CLI for managing tmux sessions that run AI coding agents
kgx
A Python library and set of command line utilities for exchanging Knowledge Graphs (KGs) that conform to or are aligned to the Biolink Model.
bmt
Biolink Model Toolkit: A Python API for working with the Biolink Model
oaklib
Ontology Access Kit: Python library for common ontology operations over a variety of backends
linkml-map
a framework for specifying and executing mappings between data models
ontogpt
OntoGPT is a Python package for extracting structured information from text with large language models (LLMs), instruction prompts, and ontology-based grounding.
linkml-reference-validator
Validation of supporting text from references and publications
venomx
venomx
noctua
TODO
linkml-owl
OWL mappings for Linked Open Data Modeling Language
valuesets
A collection of commonly used value sets
cyberian
Wrapper for agentapi for pipelines
linkml-model
Metamodel schema, documentation, and specification for the Linked Open Data Modeling Language (LinkML)
ai-blame
Extract provenance from AI agent execution traces - like git blame, but for AI-assisted edits
linkml-browser
Add your description here
linkml-data-qc
Compliance analysis tool for LinkML data files - measures recommended field population.
typedlogic
typedlogic
artl-mcp
PydanticAI and MCP approaches for getting textual representations of scientific literature from PMIDs, DOIs, etc.
noctua-mcp
MCP server for Barista to control Noctua editing
linkml-solr
None
c3p
CHEBI Classification Programs
metacoder
Add your description here
ontoeval
Benchmarking AI agents against ontology PRs
robot-mcp
A MCP server for ROBOT ontology operations
owl-mcp
A MCP server for OWL ontology operations
aurelian
aurelian
schemasheets
Package to author schemas using spreadsheets
llm-matrix
llm_matrix
semsql
None
ontobio
Library for working with OBO Library Ontologies and associations
kgcl-schema
Schema for the KGCL project.
cmdr
Core Model for Data Research (Tentative)
linkml-renderer
linkml-renderer
linkml-transformer
None
linkml-arrays
linkml-arrays
rdf-expressionizer
rdf-expressionizer
bibliomancer
bibliomancer
funowl
Python rendering of the OWL Functional syntax
funrun
funrun
kgcl-rdflib
Schema for the KGCL project.
semdsl
semdsl
rdf-sql-bulkloader
rdf-sql-bulkloader
oakx-spacy
oakx-spacy
prefixcommons
Library for working prefixcommons.org CURIEs
oakx-grape
oakx-grape
go-library
Enter description of your project here
relation-graph
oakx-robot
sparqlfun
SPARQL templates for LinkML
json-flattener
Python library for denormalizing nested dicts or json objects to tables and back
linkml-datalog
Datalog inference over LinkML schemas and data
linkml-dataops
LinkML Data Operations API
linkml-runtime-api
LinkML Runtime Environment API
sparqlslurper
SPARQL Slurper for rdflib
linkml-csv
LinkML to CSV conversion
template-configurator
Configuration tool for LinkML model generation
template-config-model
Configuration parameters for LinkML model generation
biolinkml
Biolink Modeling Language
pengines
A simple python library for interacting with SWI-Prologs Pengines
sparqlprog
Execute logic program queries against a remote SPARQL endpoint
prologterms
A simple python library for generating prolog terms
