Skip to main content
Help the Python Software Foundation raise $60,000 USD by December 31st!  Building the PSF Q4 Fundraiser
Avatar for Charles Tapley Hoyt from gravatar.com

Charles Tapley Hoyt

Username    cthoyt
Date joined   Joined on

51 projects

pystow

Last released on

Easily pick a place to store data for your python package.

pyobo

Last released on

Handling and writing OBO

bio2bel-kegg

Last released on

A package for converting KEGG gene sets into BEL

bio2bel

Last released on

A framework for converting biological data sources to BEL

pybel

Last released on

Parsing, validation, compilation, and data exchange of Biological Expression Language (BEL)

pykeen

Last released on

A package for training and evaluating multimodal knowledge graph embeddings

compath

Last released on

A web application for exploring and comparing the overlaps across pathway resources

bio2bel-msig

Last released on

A package for converting MSigDB gene sets into BEL

bel-enrichment

Last released on

A package for generating curation sheets for rationally enriching a BEL graph using INDRA and PyBEL.

guiltytargets

Last released on

A tool for ranking potential targets for a given disease

bel-repository

Last released on

A utility for loading data from repositories of BEL documents.

bel-commons

Last released on

A web application exposing core PyBEL functionalities

pybel-tools

Last released on

A cool pool of tools for BEL

pybel-jupyter

Last released on

A PyBEL extension for Jupyter notebooks

compath-utils

Last released on

A utilities package for ComPath

biokeen

Last released on

A package for training and evaluating biological knowledge graph embeddings

bio2bel-hgnc

Last released on

A package for converting HGNC to BEL

pybel-git

Last released on

PyBEL Git utilities

bel-resources

Last released on

Utilities for BEL resource files.

pybel-cx

Last released on

A PyBEL extension for interconversion with CX

bio2bel-entrez

Last released on

A package for parsing and storing Entrez Gene

hbp-knowledge

Last released on

Knowledge curated in BEL from full text during the Human Brain Pharmacome project

embeddingdb

Last released on

A package for storing and querying knowledge graph embeddings

bio2bel-mirtarbase

Last released on

A package for converting miRTarBase to BEL

bio2bel-mirbase

Last released on

Convert miRBase to BEL

bio2bel-interpro

Last released on

A package for converting InterPro to BEL

compath-resources

Last released on

ComPath Resource Utilities.

ratvec

Last released on

Generating dense embeddings for proteins using kernel PCA

bio2bel-wikipathways

Last released on

A package for converting Wikipathways to BEL

pybel-ols

Last released on

A package for building BEL resource files with the EBI Ontology Lookup Service.

nrl

Last released on

Network representation learning in Python

bio2bel-chebi

Last released on

A package for converting ChEBI to BEL

bio2bel-reactome

Last released on

A wrapper around Reactome RESTful API

neurommsig-knowledge

Last released on

Knowledge curated for NeuroMMSig during the AETIONOMY project

multisplitby

Last released on

Split an iterable into multiple using arbitrary predicates.

bio2bel-drugbank

Last released on

A package for converting DrugBank to BEL

bio2bel-sider

Last released on

Bio2BEL SIDER.

bio2bel-famplex

Last released on

Downloader, parser, and BEL converter for FamPlex

bio2bel-hsdn

Last released on

Converts the human symptoms-disease network produced by Zhou and Himmelstein to BEL

bio2bel-adeptus

Last released on

Bio2BEL ADEPTUS.

bio2bel-expasy

Last released on

A package for parsing and storing the ExPASy Enzyme Database

bio2bel-mesh

Last released on

A package for converting MeSH to BEL

bio2bel-uniprot

Last released on

A package for downloading, parsing, storing, and serializing UniProt

onto2nx

Last released on

A package for parsing ontologies in the OWL and OBO format into NetworkX graphs

bio2bel-pfam

Last released on

Bio2BEL PFAM.

bio2bel-go

Last released on

A package for converting GO to BEL

bio2bel-hippie

Last released on

Bio2BEL HIPPIE.

compath-hgnc

Last released on

A package that wraps PyHGNC to perform mappings between different gene identifiers

pybel-artifactory

Last released on

A PyBEL extension for handling BEL resources with Artifactory

bio2bel-hmdd

Last released on

A package for converting the Human microRNA Disease Database (HMDD) to BEL.

ols-client

Last released on

A Python client for the EBI Ontology Lookup Service RESTful API

Supported by

Pingdom Pingdom Monitoring Google Google Object Storage and Download Analytics Sentry Sentry Error logging AWS AWS Cloud computing DataDog DataDog Monitoring Fastly Fastly CDN DigiCert DigiCert EV certificate StatusPage StatusPage Status page