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Charles Tapley Hoyt

Username   cthoyt

Date joined   Joined on

47 projects

bel-repository

Last released on

A utility for loading data from repositories of BEL documents.

pybel

Last released on

Parsing, validation, compilation, and data exchange of Biological Expression Language (BEL)

bio2bel-hgnc

Last released on

A package for converting HGNC to BEL

compath-utils

Last released on

A utilities package for ComPath

bio2bel

Last released on

A package for converting biological data sources to BEL

pybel-git

Last released on

PyBEL Git utilities

bel-resources

Last released on

Utilities for BEL resource files.

pybel-tools

Last released on

A cool pool of tools for BEL

pybel-cx

Last released on

A PyBEL extension for interconversion with CX

bio2bel-entrez

Last released on

A package for parsing and storing Entrez Gene

hbp-knowledge

Last released on

Knowledge curated in BEL from full text during the Human Brain Pharmacome project

pyobo

Last released on

Handling and writing OBO

pykeen

Last released on

A package for training and evaluating knowledge graph embeddings

bel-enrichment

Last released on

A package for generating curation sheets for rationally enriching a BEL graph using INDRA and PyBEL.

bio2bel-kegg

Last released on

A wraper around the KEGG RESTful API

embeddingdb

Last released on

A package for storing and querying knowledge graph embeddings

compath

Last released on

A web application for exploring and comparing the overlaps across pathway resources

bio2bel-mirtarbase

Last released on

A package for converting miRTarBase to BEL

bio2bel-mirbase

Last released on

Convert miRBase to BEL

bio2bel-interpro

Last released on

A package for converting InterPro to BEL

compath-resources

Last released on

ComPath Resource Utilities.

ratvec

Last released on

Generating dense embeddings for proteins using kernel PCA

bio2bel-wikipathways

Last released on

A package for converting Wikipathways to BEL

bio2bel-msig

Last released on

A wrapper around MSIGDB

pybel-jupyter

Last released on

A PyBEL extension for Jupyter notebooks

pybel-ols

Last released on

A package for building BEL resource files with the EBI Ontology Lookup Service.

nrl

Last released on

Network representation learning in Python

bio2bel-chebi

Last released on

A package for converting ChEBI to BEL

bio2bel-reactome

Last released on

A wrapper around Reactome RESTful API

neurommsig-knowledge

Last released on

Knowledge curated for NeuroMMSig during the AETIONOMY project

multisplitby

Last released on

Split an iterable into multiple using arbitrary predicates.

bio2bel-drugbank

Last released on

A package for converting DrugBank to BEL

bio2bel-sider

Last released on

Bio2BEL SIDER.

bio2bel-famplex

Last released on

Downloader, parser, and BEL converter for FamPlex

bio2bel-hsdn

Last released on

Converts the human symptoms-disease network produced by Zhou and Himmelstein to BEL

bio2bel-adeptus

Last released on

Bio2BEL ADEPTUS.

bio2bel-expasy

Last released on

A package for parsing and storing the ExPASy Enzyme Database

bio2bel-mesh

Last released on

A package for converting MeSH to BEL

bio2bel-uniprot

Last released on

A package for downloading, parsing, storing, and serializing UniProt

onto2nx

Last released on

A package for parsing ontologies in the OWL and OBO format into NetworkX graphs

bio2bel-pfam

Last released on

Bio2BEL PFAM.

bio2bel-go

Last released on

A package for converting GO to BEL

bio2bel-hippie

Last released on

Bio2BEL HIPPIE.

compath-hgnc

Last released on

A package that wraps PyHGNC to perform mappings between different gene identifiers

pybel-artifactory

Last released on

A PyBEL extension for handling BEL resources with Artifactory

bio2bel-hmdd

Last released on

A package for converting the Human microRNA Disease Database (HMDD) to BEL.

ols-client

Last released on

A Python client for the EBI Ontology Lookup Service RESTful API

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