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Charles Tapley Hoyt

Username    cthoyt
Date joined   Joined

78 projects

bioregistry

Last released

Integrated registry of biological databases and nomenclatures

pystow

Last released

Easily pick a place to store data for your python package.

umls-downloader

Last released

Automate downloading UMLS data.

depmap-downloader

Last released

Reproducibly/automatically download data from the DepMap.

bioversions

Last released

What's the current version for each biological database?

geometric-graphs

Last released

Generate knowledge graphs with interesting geometries, like lattices.

pybacting

Last released

A python wrapper around bacting

pyobo

Last released

Handling and writing OBO

famplex

Last released

Resources for grounding protein complexes and families from text and describing their hierarchical relationships.

bio2bel

Last released

A framework for converting biological data sources to BEL

sssom

Last released

Expansion of lookup tables for controlled terms

pykeen

Last released

A package for training and evaluating multimodal knowledge graph embeddings

class-resolver

Last released

Lookup and instantiate classes with style.

biomappings

Last released

Curated and predicted mappings between biomedical identifiers in different namespaces

more-click

Last released

More click.

biolookup

Last released

Get metadata and ontological information about all biomedical entities.

drugbank-downloader

Last released

Write scripts that can get drugbank data without redistributing it

more-node2vec

Last released

Utilities for node2vec and gensim

apicuron-client

Last released

A client for interacting with APICURON

stonkgs

Last released

Sophisticated Transformers for Biomedical Text and Knowledge Graph Data

chembl-downloader

Last released

Download, open, and query ChEMBL through SQLite

nonadditivity

Last released

A program to find key complex patterns in SAR data

pybel

Last released

Parsing, validation, compilation, and data exchange of Biological Expression Language (BEL)

y0

Last released

Python code for causal modeling.

conib

Last released

Curation of Neurodegeneration in BEL (CONIB)

unittest-templates

Last released

Write less unittest boilerplate.

zenodo-client

Last released

A wrapper for the Zenodo API.

docdata

Last released

Add structured information to the end of your python docstrings.

y0-bio

Last released

Biological applications of y0

pybel-tools

Last released

A cool pool of tools for BEL

selventa-knowledge

Last released

Selventa Large and Small Corpora via PyBEL

neurommsig-epilepsy

Last released

Mechanistic pathway knowledge on Epilepsy encoded in Biological Expression Language

hemekg

Last released

Mechanistic knowledge about heme and hemolytic disorders in Biological Expression Language with PyBEL

compath-resources

Last released

ComPath Resource Utilities

bio2bel-kegg

Last released

A package for converting KEGG gene sets into BEL

compath

Last released

A web application for exploring and comparing the overlaps across pathway resources

bio2bel-msig

Last released

A package for converting MSigDB gene sets into BEL

bel-enrichment

Last released

A package for generating curation sheets for rationally enriching a BEL graph using INDRA and PyBEL.

guiltytargets

Last released

A tool for ranking potential targets for a given disease

bel-repository

Last released

A utility for loading data from repositories of BEL documents.

bel-commons

Last released

A web application exposing core PyBEL functionalities

pybel-jupyter

Last released

A PyBEL extension for Jupyter notebooks

compath-utils

Last released

A utilities package for ComPath

biokeen

Last released

A package for training and evaluating biological knowledge graph embeddings

bio2bel-hgnc

Last released

A package for converting HGNC to BEL

pybel-git

Last released

PyBEL Git utilities

bel-resources

Last released

Utilities for BEL resource files.

pybel-cx

Last released

A PyBEL extension for interconversion with CX

bio2bel-entrez

Last released

A package for parsing and storing Entrez Gene

hbp-knowledge

Last released

Knowledge curated in BEL from full text during the Human Brain Pharmacome project

embeddingdb

Last released

A package for storing and querying knowledge graph embeddings

bio2bel-mirtarbase

Last released

A package for converting miRTarBase to BEL

bio2bel-mirbase

Last released

Convert miRBase to BEL

bio2bel-interpro

Last released

A package for converting InterPro to BEL

ratvec

Last released

Generating dense embeddings for proteins using kernel PCA

bio2bel-wikipathways

Last released

A package for converting Wikipathways to BEL

pybel-ols

Last released

A package for building BEL resource files with the EBI Ontology Lookup Service.

nrl

Last released

Network representation learning in Python

bio2bel-chebi

Last released

A package for converting ChEBI to BEL

bio2bel-reactome

Last released

A wrapper around Reactome RESTful API

neurommsig-knowledge

Last released

Knowledge curated for NeuroMMSig during the AETIONOMY project

multisplitby

Last released

Split an iterable into multiple using arbitrary predicates.

bio2bel-drugbank

Last released

A package for converting DrugBank to BEL

bio2bel-sider

Last released

Bio2BEL SIDER.

bio2bel-famplex

Last released

Downloader, parser, and BEL converter for FamPlex

bio2bel-hsdn

Last released

Converts the human symptoms-disease network produced by Zhou and Himmelstein to BEL

bio2bel-adeptus

Last released

Bio2BEL ADEPTUS.

bio2bel-expasy

Last released

A package for parsing and storing the ExPASy Enzyme Database

bio2bel-mesh

Last released

A package for converting MeSH to BEL

bio2bel-uniprot

Last released

A package for downloading, parsing, storing, and serializing UniProt

onto2nx

Last released

A package for parsing ontologies in the OWL and OBO format into NetworkX graphs

bio2bel-pfam

Last released

Bio2BEL PFAM.

bio2bel-go

Last released

A package for converting GO to BEL

bio2bel-hippie

Last released

Bio2BEL HIPPIE.

compath-hgnc

Last released

A package that wraps PyHGNC to perform mappings between different gene identifiers

pybel-artifactory

Last released

A PyBEL extension for handling BEL resources with Artifactory

bio2bel-hmdd

Last released

A package for converting the Human microRNA Disease Database (HMDD) to BEL.

ols-client

Last released

A Python client for the EBI Ontology Lookup Service RESTful API

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