44 projects
bsb-neuron
NEURON simulator adapter for the BSB framework
bsb-nest
NEST simulation adapter for the BSB framework.
bsb
Black-box component framework for multiscale neural modeling
bsb-core
`bsb-core` is the backbone package contain the essential code of the BSB: A component
bsb-hdf5
HDF5 storage engine for the BSB framework.
bsb-yaml
YAML parser for the BSB framework.
bsb-json
JSON parser and utilities for the BSB.
bsb-arbor
Arbor simulation adapter for the BSB framework
bsb-test
Helpers for better and more complete tests for component developers of the BSB framework.
gg-resource-wizard
Create resource modules for gg-core.
arborize
Write descriptions for NEURON cell models in an Arbor-like manner for both the Arbor and
dbbs-models
Collection of single cell models for the Arbor and NEURON simulators of the cerebellar
dbbs-catalogue
DBBS NMODL Catalogue
nmodl-glia
NMODL Asset Manager for Arbor and NEURON
nrn-patch
Quality of life patch for the NEURON simulator.
dashing-next
Dashing allows to quickly create terminal-based dashboards in Python.
sphinxext-bsb
BSB Sphinx documentation extension
mpipool
Implementation of the futures and multiprocessing Pool interfaces based on MPI.
dbbs-mod-collection
DBBS Mod Collection
nrn-glia
NMODL Asset Manager.
bsb-plotting
Plotly-based plotting tools for the BSB framework.
nrn-diff
NEURON object differ. Recursively finds differences between objects in NEURON.
helveg-sphinx-code-tabs
Sphinx extension for adding alternative code-blocks as selectable tabs
errr
Elegant detailed Python exceptions.
bsbdocs
BSB sphinx documentation extension
smop3
Matlab to Python converter. Community maintained fork for Python 3.
pesticide
Inspect your models and get rid of bugs in your Arboretum.
nrn-subprocess
Run isolated NEURON simulations in a single Python session.
nest-on-square-wheels
Python bindings for NEST
neuro3d
Blender toolkit for visualizing neurons and simulation data
mpilock
Synchronize read/write access to resources shared between MPI processes.
gene2word
Geneset translation library
zwembad
Parallel MPIPoolExecutor implementing the concurrent.futures interface
brainwavepy
Library to interact with BrainWave's BRW and BXR files.
radialdf
A package to calculate the radial distribution function of particles
dbbs-scaffold
A morphologically detailed scaffolding package for the scientific modelling of the cerebellum.
ndsb
Collect data, turn it into static artifacts and beam it to a vault.
cereb-nest
pip installable NEST extension module, generated by pipnest.
pynb-sim
Widgets & tools for large scale simulations inside of Python jupyter notebooks
pipnest
Distribute your extension module as a pip installable package
extra-cereb-nest
pip installable NEST extension module, generated by pipnest.
auto-cereb-nest-test
pip installable NEST extension module, generated by pipnest.
paperpy
Tools for simplifying the preparation of version-controlled and well-written academic papers.
dbbs-test-mods
Glia package of NEURON models
