45 projects
geoseeq
GeoSeeq command line tools and python API
geoseeq-api
pangea-api
cap2
CAP2
gimmebio.sample_seqs
metagenscope
gimmebio.data_manager
gimmebio.cli
gimmebio.pangea
gimmebio.covid
ModuleUltra
Tools to make pipelines easier to run and distribute for large biological datasets
DataSuper
Organization for scientific projects.
gimmebio
Utilities and explorations in computational biology
gimmebio.seqs
gimmebio.stat_strains
capalyzer
Parsing functionality for the metasub CAP
microbe_directory
Codes for Microbe Directory 2.0 and above
metasub_utils.packet_parse
metasub_utils.hudson_alpha
gimmebio.kmers
gimmebio.assembly
gimmebio.entropy_scores
gimmebio.ram_seq
metasub_utils.wasabi
urban_metagenomics_tutorial
Metagenomics utilities
metasub_utils.metadata
metasub_utils
Utility functions for the MetaSUB Consortium
minerva_deconvolve
Algorithm for deconvolving and clustering barcoded short reads
metasub_utils.data_packet
gimmebio.pji
gimmebio.seqtalk
gimmebio.hiveplots
gimmebio.linked_reads
llps
A simple specification for large bioinformatics projects.
gimmebio.text_plots
gimmebio.taxa_ags_normalizer
PackageMega
Simple package manager to download and keep track of biological databases.
yaml_backed_structs
Basic python data structures backed by a human editable yaml file
metasub_utils.zurich
metasub_utils.metagenscope
metasub_utils.bridges
metasub_utils.athena
dockerswabber
Small CLI to automate management of Docker hub image tags.
gimme_input
A library of useful functions to get input from users for command line programs.
py_archy
Implementation of the popular node-archy tool in python
