43 projects
caw
ChRIS Automatic Workflows
python-pfconclient
(Python) client for the Pfcon API
chrisapp
Superclass for Chris plugin apps
pfstate
class-defintion stateful module
pfmisc
Misc utilities for FNNDSC python repos
chrispile
Syntactic sugar for running ChRIS apps locally
pfdo-med2image
Runs med2image on each nested dir of an inputdir
python-chrisclient
(Python) client for the ChRIS API
pfdo-mgz2image
Runs mgz2image on each nested dir of an inputdir
mgz2imgslices
(Python) utility to filter mgz volumes to per-voxel-value directories of jpg/png image slices
pfdo-run
Run arbitrary CLI on each nested dir of an inputdir
pfdo
Base machinery for performing operations on pftrees
med2image
(Python) utility to convert medical images to jpg and png
pfurl
(Python) Path-File URL comms
pftree
Utility to create dict representations of file system trees.
mgz2imagetree
(Python) utility to filter mgz volumes to per-voxel-value directories of jpg/png image slices
pfcon
(Python) Process and File Controller
pfioh
Path-and-File-IO-over-HTTP
pman
(Python) Process Manager
pfdicom-tagSub
Process DICOM tags and performs substitutions -- part of the pf* family.
pyimgconvert
(Python) utility which acts as a wrapper around the Linux CLI: convert
pfdicom-tagExtract
Extract DICOM header info -- part of the pf* family.
pypx
Wrapper around DCMTK for PACS related actions (echo, find, move and listen)
medcon
A ChRIS DS plugin that wraps around medcon and provides NifTI to DICOM conversion capability.
python-chrisstoreclient
(Python) client for the ChRIS store API
z2labelmap
Convert lh/rh z-score vector to FreeSurfer labelmap
pfdcm
Path and File DICOM
pfstorage
object storage interface
pfdicom-rev
Process DICOM trees and create JSON summares for the ReV viewer.
pfdicom
Base module for parsing DICOM files in the pf* family.
pfdicom-agesort
Process ChRIS trees of DICOM data and reorder by age.
freesurfer-pp-moc
A simple/dummy app that simulates a FreeSurfer run
mpcs
This app simulates an MPC compute call and creates a z-score file.
pacscopy
copy from (openstorage) to output directory
freesurfer-pp
A simple/dummy app that simulates a FreeSurfer run
mri10yr06mo01da-normal
An anonymized MRI exemplar
simpledsapp-moc
A simple DS type ChRIS application specifically created for the Massachusetts Open Cloud remote computing environment.
simplefsapp-moc
A demo/testing simplefsapp for the MOC compute environment.
simpledsapp
A simple/dummy ChRIS DS app
pfdicomtag
(Python) utility to extract meta data from trees of organized DICOM files.
pacsretrieve
Interact with a PACS through an intermediary service, "pfdcm" (not included).
pacsquery
Query a PACS through an intermediary service, "pfdcm" (not included).
dcmutils
A collection of DICOM related utilities
