27 projects
protstruc
Utility library for handling protein structures in Python.
chromoformer
Chromoformer - Pytorch
deepab-pytorch
Unofficial implementation of DeepAb in PyTorch.
pifold-pytorch
Unofficial implementation of PiFold in PyTorch.
pdpp-bhi
PDPP - BHI
foldingdiff-pytorch
Unofficial implementation of foldingdiff in PyTorch.
rasp-pytorch
RaSP - Pytorch
antiberty-pytorch
Antiberty - Pytorch
igfold-pytorch
IgFold - Pytorch
tranception-pytorch-dohlee
Tranception - Pytorch
sac2021
5th solution for Samsung AI Challenge for Scientific Discovery (2021)
proteinbert-pytorch-reproduction
ProteinBERT - Pytorch
eve-pytorch
EVE - Pytorch
bpnet-pytorch
BPNet - Pytorch
spliceai-pytorch
SpliceAI - Pytorch
abyssal-pytorch
Abyssal - Pytorch
neticspy
Python implementation of NetICS. (Network-based Integration of Multi-omics data).
cleanlog
Python package for nice colored logs.
torchbio
Pytorch utilities for bioinformatics.
dohlee
My personal python utility library.
subclone-prism
Methylation Pattern-based, Reference-free Inference of Subclonal Makeup
biopipe
Pipeable commandline utilities for simple bioinformatics research.
snakespit
Get snakemke template rules with ease.
njsd
Calculate Jensen-Shannon Divergence between two gene expression profiles to measure transcriptome-based intratumor heterogeneity(tITH).
mutation-waterfall
Python library for visualizing mutation landscape as waterfall diagram.
pytrello
Python wrapper for Trello API.
pysuffixarray
Suffix array implementation in python.
