19 projects
checkm-genome
Assess the quality of putative genome bins.
gtdbtk
A toolkit for assigning objective taxonomic classifications to bacterial and archaeal genomes.
unitem
Ensemble binning strategies for combining the output of multiple binning methods.
phylorank
Assigns taxonomic ranks based on evolutionary divergence.
gtdb-validation-tk
A toolbox for validating the GTDB taxonomy.
biolib
Package for common tasks in bioinformatics.
ani-cache
Cache-aware ANI calculations.
comparem
A toolbox for comparative genomics.
refinem
A toolbox for improving population genomes.
GenomeTreeTk
A toolbox for working with genome trees.
gtdb-species-clusters
This toolkit provides functionality for establishing, updating, and validating the species clusters used in the Genome Taxonomy Database.
GenomeTk
A toolbox for working with genomes.
viewm
Visualization of functional modules to aid biological interpretation of genomes.
drawm
A toolkit for creating publication-quality images of phylogenetic trees.
STAMP
A graphical software package for analyzing taxonomic and functional profiles.
dbb
Bin scaffolds into population genomes.
cleanm
A toolbox for improving population genomes.
linkm
Finds links between 16S reads and assembled contigs.
seqpy
seqpy
