Skip to main content
Avatar for dparks from gravatar.com
Username    dparks
Date joined   Joined

19 projects

checkm-genome

Last released

Assess the quality of putative genome bins.

gtdbtk

Last released

A toolkit for assigning objective taxonomic classifications to bacterial and archaeal genomes.

unitem

Last released

Ensemble binning strategies for combining the output of multiple binning methods.

phylorank

Last released

Assigns taxonomic ranks based on evolutionary divergence.

gtdb-validation-tk

Last released

A toolbox for validating the GTDB taxonomy.

biolib

Last released

Package for common tasks in bioinformatics.

ani-cache

Last released

Cache-aware ANI calculations.

comparem

Last released

A toolbox for comparative genomics.

refinem

Last released

A toolbox for improving population genomes.

GenomeTreeTk

Last released

A toolbox for working with genome trees.

gtdb-species-clusters

Last released

This toolkit provides functionality for establishing, updating, and validating the species clusters used in the Genome Taxonomy Database.

GenomeTk

Last released

A toolbox for working with genomes.

viewm

Last released

Visualization of functional modules to aid biological interpretation of genomes.

drawm

Last released

A toolkit for creating publication-quality images of phylogenetic trees.

STAMP

Last released

A graphical software package for analyzing taxonomic and functional profiles.

dbb

Last released

Bin scaffolds into population genomes.

cleanm

Last released

A toolbox for improving population genomes.

linkm

Last released

Finds links between 16S reads and assembled contigs.

seqpy

Last released

seqpy

Supported by

AWS AWS Cloud computing and Security Sponsor Datadog Datadog Monitoring Fastly Fastly CDN Google Google Download Analytics Microsoft Microsoft PSF Sponsor Pingdom Pingdom Monitoring Sentry Sentry Error logging StatusPage StatusPage Status page