19 projects
bigraph-schema
A serializable type schema for compositional systems biology
process-bigraph
None
vivarium-simservice
None
bigraph-viz
A graphviz-based plotting tool for compositional bigraph schema
vivarium-core
Engine for composing and simulating computational biology models with the Vivarium interface.
tumor-tcell
bigraph-builder
sed2
vivarium-convenience
provides a vivarium process with a configurable convenience kinetics
vivarium-multibody
vivarium-cell
A collection of models for simulating cells with Vivarium.
vivarium-notebooks
vivarium-cobra
vivarium-smoldyn
vivarium-bioscrape
vivarium-scripts
miscellaneous scripts for vivarium projects
